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All interfaces > All interologs > Interface groups > group107 > 2AB4_A_B

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Licorice
Surface

RNA

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Licorice
Surface

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Chain
Chain (with hetatm)
Chainbow
Hydrophobicity
Electrostatics (surface only)
Conservation*

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Rim - Core

Contacts -

2AB4_A
2AB4_B
Distance
Base Pair
Hbond nuc:res
Base Stacking
Residue conservation
A:15 [THR] B:12 [G] 3.77 92.2
A:15 [THR] B:13 [A] 2.78 B:9 [U] 92.2
A:16 [SER] B:12 [G] 4.8 98.84
A:17 [HIS] B:13 [A] 3.07 B:9 [U] 66.12
A:17 [HIS] B:15 [U] 2.79 sugar:SC base/AA stacks 66.12
A:18 [ASP] B:13 [A] 4.42 B:9 [U] 64.2
A:20 [VAL] B:13 [A] 4.19 B:9 [U] 82.96
A:21 [ASP] B:15 [U] 4.78 53.68
A:24 [ARG] B:15 [U] 3.39 sugar:SC 84.86
A:24 [ARG] B:16 [C] 3.72 B:8 [G] 84.86
A:30 [ARG] B:15 [U] 3.21 base:SC 72.61
A:30 [ARG] B:16 [C] 3.68 B:8 [G] 72.61
A:31 [LYS] B:16 [C] 4.11 B:8 [G] 88.07
A:31 [LYS] B:17 [C] 3.31 B:7 [G] 88.07
A:32 [VAL] B:13 [A] 4.73 B:9 [U] 83.46
A:32 [VAL] B:16 [C] 3.01 B:8 [G] sugar:BB 83.46
A:33 [GLY] B:13 [A] 3.75 B:9 [U] 97.47
A:33 [GLY] B:16 [C] 3.5 B:8 [G] 97.47
A:34 [HIS] B:9 [U] 3.7 B:13 [A] 97.33
A:34 [HIS] B:13 [A] 2.87 B:9 [U] base:BB, base:BB base/AA stacks 97.33
A:34 [HIS] B:16 [C] 4.68 B:8 [G] 97.33
A:35 [GLY] B:9 [U] 4.2 B:13 [A] 72.13
A:35 [GLY] B:10 [FHU] 4.45 72.13
A:35 [GLY] B:13 [A] 4.73 B:9 [U] 72.13
A:36 [GLY] B:9 [U] 3.32 B:13 [A] 98.89
A:36 [GLY] B:10 [FHU] 3.24 98.89
A:36 [GLY] B:13 [A] 4.81 B:9 [U] 98.89
A:37 [THR] B:9 [U] 3.04 B:13 [A] sugar:BB 98.79
A:37 [THR] B:10 [FHU] 3.2 98.79
A:37 [THR] B:11 [C] 3.07 98.79
A:37 [THR] B:12 [G] 3.74 98.79
A:37 [THR] B:13 [A] 4.6 B:9 [U] 98.79
A:38 [LEU] B:10 [FHU] 3.46 98.89
A:39 [ASP] B:10 [FHU] 2.66 base:SC, base:BB, sugar:SC 99.0
A:39 [ASP] B:11 [C] 3.2 99.0
A:40 [PRO] B:11 [C] 4.06 93.17
A:40 [PRO] B:12 [G] 3.1 93.17
A:42 [ALA] B:10 [FHU] 4.77 98.73
A:54 [THR] B:16 [C] 3.67 B:8 [G] 93.47
A:54 [THR] B:17 [C] 3.06 B:7 [G] 93.47
A:55 [ARG] B:17 [C] 4.46 B:7 [G] 86.91
A:55 [ARG] B:18 [G] 4.06 B:6 [C] 86.91
A:57 [LEU] B:16 [C] 3.62 B:8 [G] 40.78
A:58 [GLU] B:17 [C] 3.75 B:7 [G] 47.04
A:58 [GLU] B:18 [G] 3.93 B:6 [C] 47.04
A:61 [LYS] B:8 [G] 2.74 B:16 [C] sugar:SC 7.95
A:61 [LYS] B:9 [U] 3.67 B:13 [A] 7.95
A:61 [LYS] B:10 [FHU] 4.65 7.95
A:65 [LYS] B:9 [U] 4.84 B:13 [A] 98.76
A:65 [LYS] B:10 [FHU] 3.32 98.76
A:67 [PHE] B:10 [FHU] 2.67 98.57
A:79 [THR] B:11 [C] 3.11 base:SC 95.02
A:81 [ASP] B:11 [C] 2.66 base:SC 98.97
A:83 [THR] B:11 [C] 3.34 68.85
A:117 [TYR] B:11 [C] 3.51 73.63
A:118 [SER] B:11 [C] 3.56 99.0
A:119 [ALA] B:8 [G] 4.66 B:16 [C] 96.96
A:119 [ALA] B:9 [U] 3.75 B:13 [A] 96.96
A:119 [ALA] B:11 [C] 3.23 96.96
A:119 [ALA] B:12 [G] 4.67 96.96
A:120 [LYS] B:8 [G] 4.01 B:16 [C] 73.27
A:120 [LYS] B:9 [U] 2.77 B:13 [A] 73.27
A:120 [LYS] B:11 [C] 4.43 73.27
A:121 [LYS] B:6 [C] 4.6 B:18 [G] 90.59
A:121 [LYS] B:7 [G] 3.2 B:17 [C] 90.59
A:121 [LYS] B:8 [G] 2.99 B:16 [C] 90.59
A:122 [TYR] B:7 [G] 3.09 B:17 [C] 67.28
A:123 [LYS] B:6 [C] 4.36 B:18 [G] 68.8
A:123 [LYS] B:7 [G] 4.05 B:17 [C] 68.8
A:124 [GLY] B:6 [C] 3.9 B:18 [G] 98.87
A:124 [GLY] B:7 [G] 2.83 B:17 [C] 98.87
A:125 [GLU] B:7 [G] 4.42 B:17 [C] 70.23
A:126 [ARG] B:7 [G] 4.49 B:17 [C] 87.45
A:126 [ARG] B:8 [G] 2.78 B:16 [C] base:SC 87.45
A:126 [ARG] B:9 [U] 2.97 B:13 [A] base:SC 87.45
A:126 [ARG] B:13 [A] 4.52 B:9 [U] 87.45
A:126 [ARG] B:14 [A] 3.23 87.45
A:126 [ARG] B:16 [C] 4.73 B:8 [G] 87.45
A:128 [TYR] B:11 [C] 3.44 88.6
A:128 [TYR] B:12 [G] 3.63 88.6
A:128 [TYR] B:13 [A] 4.91 B:9 [U] 88.6
A:128 [TYR] B:14 [A] 3.77 88.6
A:132 [ARG] B:11 [C] 3.26 base:SC 94.97
A:132 [ARG] B:12 [G] 2.97 sugar:SC base/AA stacks 94.97
A:142 [LYS] B:9 [U] 4.56 B:13 [A] 89.54
A:167 [PRO] B:10 [FHU] 5.0 74.25
A:168 [GLY] B:9 [U] 4.78 B:13 [A] 98.68
A:168 [GLY] B:10 [FHU] 3.98 98.68
A:169 [THR] B:10 [FHU] 3.46 96.1
A:170 [TYR] B:10 [FHU] 3.1 97.47
A:170 [TYR] B:11 [C] 2.77 97.47
A:171 [ILE] B:10 [FHU] 2.8 base:BB 90.24
A:172 [ARG] B:10 [FHU] 2.79 base:BB, base:SC 98.97
A:172 [ARG] B:11 [C] 3.73 base/AA stacks 98.97
A:173 [SER] B:10 [FHU] 4.75 88.23
A:191 [LEU] B:10 [FHU] 3.43 95.13
A:193 [ARG] B:10 [FHU] 3.31 99.0
A:304 [LYS] B:17 [C] 4.03 B:7 [G] 61.86
A:304 [LYS] B:18 [G] 2.74 B:6 [C] 61.86

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*Conservation was calculated using Rate4Site
NB: conservation is missing (completly white) for a very small minority of cases in which no homologous sequences were found (e.g. synthetic proteins 7D3J_A & 7EU9_A)

Properties of this interface

Interolog group ID Structure ID Structure description
 UniProt ID
 		ECOD label(s)
 		RFAM label(s)
 		Is ribosome? RCSB PDB link
group107 2AB4_A_B A: tRNA pseudouridine synthase b, Thermotoga maritima (genetically engineered) B: N/A Q9WZW0 PUA domain & Pseudouridine synthase ✘

Interologs

Total number of interologs for this interface: 3

Interface 1 Interface 2 Percentage conservation
 		Interface TM-score
 		Interface RMSD
 		Percentage identity
 		Common ECOD label(s)
 		Common RFAM label(s)
 		Explore both interfaces
1R3E_A_C 2AB4_A_B 0.97 0.98 0.48 0.54 PUA domain & Pseudouridine synthase compare
1K8W_A_B 2AB4_A_B 0.90 0.91 0.79 0.54 PUA domain & Pseudouridine synthase compare
2AB4_A_B 3HJW_A_D,E 0.81 0.78 1.4 0.15 PUA domain & Pseudouridine synthase compare