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All interfaces > All interologs > Interface groups > group107 > 2HVY_A_E

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Licorice
Surface

RNA

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Licorice
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Chain
Chain (with hetatm)
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Hydrophobicity
Electrostatics (surface only)
Conservation*

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Rim - Core

Contacts -

2HVY_A
2HVY_E
Distance
Base Pair
Hbond nuc:res
Base Stacking
Residue conservation
A:58 [PRO] E:19 [C] 4.67 E:39 [G] 52.64
A:59 [GLY] E:17 [C] 4.2 E:41 [G] 93.04
A:59 [GLY] E:18 [C] 3.39 E:40 [G] 93.04
A:59 [GLY] E:19 [C] 4.73 E:39 [G] 93.04
A:60 [PRO] E:18 [C] 3.71 E:40 [G] 62.66
A:60 [PRO] E:19 [C] 4.9 E:39 [G] 62.66
A:61 [THR] E:42 [U] 4.22 E:16 [G] 90.9
A:63 [HIS] E:42 [U] 3.2 E:16 [G] 72.1
A:63 [HIS] E:43 [A] 2.78 72.1
A:63 [HIS] E:44 [A] 4.79 72.1
A:63 [HIS] E:45 [U] 3.91 72.1
A:64 [GLU] E:17 [C] 4.51 E:41 [G] 67.01
A:64 [GLU] E:18 [C] 3.79 E:40 [G] 67.01
A:64 [GLU] E:41 [G] 2.6 E:17 [C] base:SC 67.01
A:64 [GLU] E:42 [U] 3.72 E:16 [G] 67.01
A:67 [ALA] E:42 [U] 3.99 E:16 [G] 51.59
A:68 [TRP] E:18 [C] 3.84 E:40 [G] 48.19
A:68 [TRP] E:19 [C] 4.19 E:39 [G] 48.19
A:68 [TRP] E:41 [G] 4.56 E:17 [C] 48.19
A:79 [GLY] E:45 [U] 3.73 94.53
A:80 [HIS] E:45 [U] 2.71 base:BB, base:BB base/AA stacks 96.73
A:81 [GLY] E:45 [U] 4.65 62.0
A:82 [GLY] E:45 [U] 3.47 base:BB 97.83
A:83 [THR] E:45 [U] 3.76 98.72
A:86 [PRO] E:17 [C] 4.8 E:41 [G] 97.53
A:101 [ARG] E:5 [C] 2.67 E:53 [G] 83.36
A:101 [ARG] E:6 [C] 3.99 E:52 [G] 83.36
A:103 [VAL] E:45 [U] 4.39 66.34
A:107 [LEU] E:45 [U] 3.25 4.36
A:259 [LYS] E:60 [A] 4.07 60.33
A:259 [LYS] E:61 [G] 2.88 60.33
A:261 [SER] E:60 [A] 2.68 sugar:SC 57.62
A:261 [SER] E:61 [G] 3.03 57.62
A:262 [ALA] E:60 [A] 3.49 48.37
A:265 [ALA] E:58 [A] 3.59 57.45
A:265 [ALA] E:60 [A] 3.33 57.45
A:266 [VAL] E:4 [U] 4.82 E:54 [A] 67.62
A:266 [VAL] E:60 [A] 4.77 67.62
A:267 [THR] E:4 [U] 3.69 E:54 [A] 51.85
A:268 [HIS] E:3 [G] 2.65 E:55 [C] base:BB 71.63
A:268 [HIS] E:4 [U] 4.58 E:54 [A] 71.63
A:268 [HIS] E:55 [C] 3.22 E:3 [G] sugar:SC 71.63
A:268 [HIS] E:56 [C] 3.66 E:2 [G] sugar:SC 71.63
A:268 [HIS] E:58 [A] 2.86 base:BB 71.63
A:269 [GLY] E:3 [G] 2.53 E:55 [C] sugar:BB 98.5
A:269 [GLY] E:4 [U] 3.27 E:54 [A] 98.5
A:269 [GLY] E:58 [A] 3.32 98.5
A:270 [ALA] E:3 [G] 4.66 E:55 [C] 56.28
A:270 [ALA] E:58 [A] 3.4 56.28
A:270 [ALA] E:60 [A] 3.62 56.28
A:271 [ASP] E:60 [A] 3.18 base:BB 41.58
A:272 [LEU] E:60 [A] 3.98 65.48
A:273 [ALA] E:59 [C] 3.43 7.43
A:273 [ALA] E:60 [A] 3.01 base:BB 7.43
A:274 [VAL] E:59 [C] 4.78 2.66
A:274 [VAL] E:60 [A] 4.92 2.66
A:275 [PRO] E:59 [C] 3.64 41.04
A:275 [PRO] E:60 [A] 3.65 41.04
A:275 [PRO] E:61 [G] 4.08 41.04
A:276 [GLY] E:60 [A] 3.39 42.42
A:316 [THR] E:59 [C] 4.66 32.34
A:317 [LYS] E:59 [C] 3.41 18.39
A:318 [GLY] E:59 [C] 2.87 base:BB 67.06
A:319 [ILE] E:59 [C] 3.61 2.27
A:323 [VAL] E:3 [G] 4.72 E:55 [C] 52.91
A:323 [VAL] E:4 [U] 3.8 E:54 [A] 52.91
A:324 [GLU] E:4 [U] 4.03 E:54 [A] 27.57
A:324 [GLU] E:5 [C] 4.16 E:53 [G] 27.57
A:325 [LYS] E:4 [U] 4.67 E:54 [A] 70.05
A:325 [LYS] E:5 [C] 3.41 E:53 [G] 70.05
A:326 [VAL] E:4 [U] 3.49 E:54 [A] 87.16
A:326 [VAL] E:5 [C] 2.88 E:53 [G] 87.16
A:330 [ARG] E:3 [G] 4.12 E:55 [C] 5.58
A:330 [ARG] E:4 [U] 2.47 E:54 [A] base:SC 5.58
A:330 [ARG] E:5 [C] 3.34 E:53 [G] sugar:SC 5.58
A:330 [ARG] E:54 [A] 4.13 E:4 [U] 5.58
A:330 [ARG] E:55 [C] 3.05 E:3 [G] base:SC 5.58
A:335 [LYS] E:55 [C] 4.05 E:3 [G] 55.29
A:335 [LYS] E:56 [C] 2.54 E:2 [G] 55.29
A:337 [TRP] E:56 [C] 3.17 E:2 [G] 50.28
A:337 [TRP] E:57 [C] 2.75 E:1 [G] 50.28
A:337 [TRP] E:58 [A] 3.42 50.28
A:337 [TRP] E:59 [C] 4.05 50.28
A:337 [TRP] E:60 [A] 3.86 50.28

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*Conservation was calculated using Rate4Site
NB: conservation is missing (completly white) for a very small minority of cases in which no homologous sequences were found (e.g. synthetic proteins 7D3J_A & 7EU9_A)

Properties of this interface

Interolog group ID Structure ID Structure description
 UniProt ID
 		ECOD label(s)
 		RFAM label(s)
 		Is ribosome? RCSB PDB link
group107 2HVY_A_E A: Probable tRNA pseudouridine synthase b, Pyrococcus furiosus (genetically engineered) E: H/aca RNA Q7LWY0 PUA domain & Pseudouridine synthase ✘

Interologs

Total number of interologs for this interface: 3

Interface 1 Interface 2 Percentage conservation
 		Interface TM-score
 		Interface RMSD
 		Percentage identity
 		Common ECOD label(s)
 		Common RFAM label(s)
 		Explore both interfaces
2HVY_A_E 3LWR_A_D,E 0.78 0.94 0.97 0.5 PUA domain & Pseudouridine synthase compare
2HVY_A_E 3HJW_A_D,E 0.77 0.93 1.3 0.5 PUA domain & Pseudouridine synthase compare
2HVY_A_E 3HAX_A_E,F 0.79 0.95 0.92 0.85 PUA domain & Pseudouridine synthase compare