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All interfaces > All interologs > Interface groups > group107 > 3HAX_A_E,F

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Licorice
Surface

RNA

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Licorice
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Chain
Chain (with hetatm)
Chainbow
Hydrophobicity
Electrostatics (surface only)
Conservation*

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Rim - Core

Contacts -

3HAX_A
3HAX_E,F
Distance
Base Pair
Hbond nuc:res
Base Stacking
Residue conservation
A:58 [PRO] E:19 [C] 4.63 E:39 [G] 54.96
A:59 [GLY] E:17 [C] 4.36 E:41 [G] 89.39
A:59 [GLY] E:18 [C] 3.37 E:40 [G] 89.39
A:59 [GLY] E:19 [C] 4.39 E:39 [G] 89.39
A:60 [PRO] E:18 [C] 3.74 E:40 [G] 66.1
A:61 [THR] E:16 [G] 4.95 E:42 [U] 91.36
A:61 [THR] E:42 [U] 4.03 E:16 [G] 91.36
A:61 [THR] F:69 [G] 3.82 91.36
A:63 [HIS] E:42 [U] 3.83 E:16 [G] 74.21
A:63 [HIS] E:43 [A] 3.08 F:67 [U] sugar:BB base/AA stacks 74.21
A:63 [HIS] F:69 [G] 4.38 74.21
A:63 [HIS] F:70 [A] 3.01 E:15 [U] 74.21
A:64 [GLU] E:17 [C] 4.32 E:41 [G] 70.03
A:64 [GLU] E:18 [C] 3.97 E:40 [G] 70.03
A:64 [GLU] E:41 [G] 2.84 E:17 [C] base:SC 70.03
A:64 [GLU] E:42 [U] 3.47 E:16 [G] 70.03
A:64 [GLU] E:43 [A] 4.79 F:67 [U] 70.03
A:66 [VAL] E:43 [A] 3.22 F:67 [U] 84.48
A:67 [ALA] E:42 [U] 3.62 E:16 [G] 52.87
A:67 [ALA] E:43 [A] 4.17 F:67 [U] 52.87
A:68 [TRP] E:18 [C] 4.48 E:40 [G] 44.27
A:68 [TRP] E:19 [C] 4.3 E:39 [G] 44.27
A:68 [TRP] E:41 [G] 4.17 E:17 [C] 44.27
A:70 [LYS] E:43 [A] 3.69 F:67 [U] 84.31
A:70 [LYS] E:44 [A] 2.66 F:66 [U] 84.31
A:76 [GLU] E:44 [A] 4.69 F:66 [U] 66.41
A:77 [LYS] E:6 [C] 3.28 E:52 [G] 85.15
A:77 [LYS] E:7 [G] 2.8 E:51 [C] 85.15
A:78 [ALA] E:43 [A] 3.11 F:67 [U] sugar:BB 75.91
A:78 [ALA] E:44 [A] 3.21 F:66 [U] 75.91
A:79 [GLY] E:43 [A] 4.03 F:67 [U] 94.6
A:79 [GLY] E:44 [A] 3.7 F:66 [U] 94.6
A:80 [HIS] E:43 [A] 3.34 F:67 [U] base/AA stacks 97.08
A:80 [HIS] E:44 [A] 4.7 F:66 [U] 97.08
A:80 [HIS] F:67 [U] 3.88 E:43 [A] 97.08
A:81 [GLY] F:67 [U] 4.69 E:43 [A] 61.62
A:81 [GLY] F:68 [FHU] 4.38 61.62
A:82 [GLY] F:67 [U] 3.37 E:43 [A] 97.76
A:82 [GLY] F:68 [FHU] 3.3 97.76
A:83 [THR] E:43 [A] 4.6 F:67 [U] 98.73
A:83 [THR] F:67 [U] 3.25 E:43 [A] sugar:BB 98.73
A:83 [THR] F:68 [FHU] 3.14 98.73
A:83 [THR] F:69 [G] 3.96 98.73
A:83 [THR] F:70 [A] 4.53 E:15 [U] 98.73
A:84 [LEU] F:68 [FHU] 3.9 97.08
A:85 [ASP] F:68 [FHU] 2.5 base:SC, base:BB, sugar:SC, sugar:SC 98.11
A:85 [ASP] F:69 [G] 3.17 98.11
A:86 [PRO] E:17 [C] 4.3 E:41 [G] 97.46
A:86 [PRO] F:69 [G] 3.61 97.46
A:87 [LYS] F:69 [G] 3.09 base:SC 52.78
A:88 [VAL] F:68 [FHU] 3.93 95.52
A:100 [THR] E:44 [A] 3.47 F:66 [U] 91.71
A:100 [THR] E:45 [U] 3.77 F:65 [A] 91.71
A:101 [ARG] E:5 [C] 2.65 E:53 [G] 84.83
A:101 [ARG] E:6 [C] 3.53 E:52 [G] 84.83
A:101 [ARG] E:45 [U] 3.93 F:65 [A] 84.83
A:101 [ARG] E:46 [U] 3.57 F:64 [A] 84.83
A:103 [VAL] E:44 [A] 3.82 F:66 [U] 59.1
A:103 [VAL] E:45 [U] 3.55 F:65 [A] 59.1
A:104 [GLN] E:45 [U] 3.17 F:65 [A] 54.51
A:104 [GLN] E:46 [U] 3.05 F:64 [A] 54.51
A:107 [LEU] E:44 [A] 4.65 F:66 [U] 28.64
A:107 [LEU] E:45 [U] 4.18 F:65 [A] 28.64
A:107 [LEU] F:66 [U] 4.59 E:44 [A] 28.64
A:107 [LEU] F:67 [U] 3.44 E:43 [A] 28.64
A:107 [LEU] F:68 [FHU] 3.81 28.64
A:109 [ALA] F:68 [FHU] 4.85 0.0
A:111 [LYS] F:67 [U] 4.38 E:43 [A] 98.22
A:111 [LYS] F:68 [FHU] 2.87 98.22
A:113 [TYR] F:68 [FHU] 3.04 base/AA stacks 98.43
A:145 [LEU] F:70 [A] 4.54 E:15 [U] 58.05
A:146 [ARG] F:69 [G] 3.12 base/AA stacks 66.25
A:146 [ARG] F:70 [A] 3.65 E:15 [U] 66.25
A:147 [SER] F:69 [G] 3.46 98.95
A:147 [SER] F:70 [A] 3.34 E:15 [U] 98.95
A:147 [SER] F:71 [C] 4.4 E:14 [G] 98.95
A:148 [ALA] F:66 [U] 4.05 E:44 [A] 96.44
A:148 [ALA] F:67 [U] 3.71 E:43 [A] 96.44
A:148 [ALA] F:69 [G] 2.97 96.44
A:148 [ALA] F:70 [A] 3.38 E:15 [U] 96.44
A:149 [VAL] F:66 [U] 3.44 E:44 [A] 85.56
A:149 [VAL] F:67 [U] 3.28 E:43 [A] 85.56
A:149 [VAL] F:69 [G] 4.41 85.56
A:150 [LYS] F:65 [A] 2.76 E:45 [U] 73.94
A:150 [LYS] F:66 [U] 2.93 E:44 [A] 73.94
A:152 [ARG] F:65 [A] 3.09 E:45 [U] 44.48
A:152 [ARG] F:66 [U] 2.79 E:44 [A] 44.48
A:154 [ARG] F:66 [U] 3.96 E:44 [A] 94.76
A:154 [ARG] F:67 [U] 2.87 E:43 [A] 94.76
A:156 [ARG] F:66 [U] 4.35 E:44 [A] 90.09
A:156 [ARG] F:67 [U] 2.84 E:43 [A] 90.09
A:179 [ALA] F:67 [U] 3.39 E:43 [A] 67.86
A:179 [ALA] F:68 [FHU] 3.4 67.86
A:180 [GLY] F:67 [U] 3.51 E:43 [A] 98.84
A:180 [GLY] F:68 [FHU] 3.14 98.84
A:181 [THR] F:68 [FHU] 3.37 98.22
A:182 [TYR] F:68 [FHU] 3.36 98.78
A:182 [TYR] F:69 [G] 2.76 98.78
A:183 [ILE] F:68 [FHU] 2.97 base:BB 89.09
A:184 [ARG] F:68 [FHU] 3.38 base:BB 99.0
A:184 [ARG] F:69 [G] 3.3 base:SC 99.0
A:200 [MET] F:68 [FHU] 3.56 82.85
A:203 [LEU] F:68 [FHU] 3.84 98.84
A:205 [ARG] F:68 [FHU] 2.71 99.0
A:259 [LYS] E:60 [A] 3.81 54.19
A:259 [LYS] E:61 [G] 2.83 54.19
A:261 [SER] E:60 [A] 2.67 sugar:SC 57.43
A:261 [SER] E:61 [G] 3.21 57.43
A:262 [ALA] E:60 [A] 3.55 40.36
A:265 [ALA] E:58 [A] 3.72 50.37
A:265 [ALA] E:60 [A] 3.43 50.37
A:266 [VAL] E:4 [U] 4.88 E:54 [A] 63.69
A:266 [VAL] E:60 [A] 4.87 63.69
A:267 [THR] E:4 [U] 3.85 E:54 [A] 35.04
A:268 [HIS] E:3 [G] 2.8 E:55 [C] base:BB 70.98
A:268 [HIS] E:4 [U] 4.69 E:54 [A] 70.98
A:268 [HIS] E:55 [C] 3.59 E:3 [G] sugar:SC 70.98
A:268 [HIS] E:56 [C] 3.52 E:2 [G] sugar:SC 70.98
A:268 [HIS] E:58 [A] 3.07 base:BB 70.98
A:269 [GLY] E:3 [G] 2.44 E:55 [C] sugar:BB 98.51
A:269 [GLY] E:4 [U] 3.34 E:54 [A] 98.51
A:269 [GLY] E:58 [A] 3.35 98.51
A:270 [ALA] E:3 [G] 4.61 E:55 [C] 55.79
A:270 [ALA] E:58 [A] 3.45 55.79
A:270 [ALA] E:60 [A] 3.53 55.79
A:271 [ASP] E:60 [A] 3.03 base:BB 44.28
A:272 [LEU] E:60 [A] 3.99 65.74
A:273 [ALA] E:59 [C] 3.23 0.16
A:273 [ALA] E:60 [A] 3.07 base:BB 0.16
A:274 [VAL] E:59 [C] 4.84 31.21
A:275 [PRO] E:59 [C] 3.48 40.58
A:275 [PRO] E:60 [A] 3.7 40.58
A:275 [PRO] E:61 [G] 4.08 40.58
A:276 [GLY] E:60 [A] 3.35 39.35
A:316 [THR] E:59 [C] 4.75 34.84
A:317 [LYS] E:59 [C] 3.02 sugar:SC 35.15
A:317 [LYS] E:60 [A] 2.81 35.15
A:318 [GLY] E:59 [C] 2.8 base:BB 66.05
A:319 [ILE] E:59 [C] 3.59 1.38
A:323 [VAL] E:3 [G] 4.57 E:55 [C] 53.97
A:323 [VAL] E:4 [U] 3.86 E:54 [A] 53.97
A:324 [GLU] E:4 [U] 4.06 E:54 [A] 39.5
A:324 [GLU] E:5 [C] 3.87 E:53 [G] 39.5
A:324 [GLU] E:47 [A] 4.51 F:63 [U] 39.5
A:325 [LYS] E:4 [U] 4.48 E:54 [A] 70.22
A:325 [LYS] E:5 [C] 3.34 E:53 [G] 70.22
A:325 [LYS] E:46 [U] 2.99 F:64 [A] 70.22
A:325 [LYS] E:47 [A] 2.75 F:63 [U] 70.22
A:326 [VAL] E:4 [U] 3.48 E:54 [A] 88.9
A:326 [VAL] E:5 [C] 2.9 E:53 [G] 88.9
A:330 [ARG] E:3 [G] 4.14 E:55 [C] 0.76
A:330 [ARG] E:4 [U] 2.44 E:54 [A] base:SC 0.76
A:330 [ARG] E:5 [C] 3.56 E:53 [G] sugar:SC 0.76
A:330 [ARG] E:54 [A] 3.92 E:4 [U] 0.76
A:330 [ARG] E:55 [C] 2.91 E:3 [G] base:SC, sugar:SC 0.76
A:330 [ARG] E:56 [C] 4.59 E:2 [G] 0.76
A:335 [LYS] E:55 [C] 4.59 E:3 [G] 43.75
A:335 [LYS] E:56 [C] 3.12 E:2 [G] 43.75
A:337 [TRP] E:56 [C] 3.32 E:2 [G] 7.07
A:337 [TRP] E:57 [C] 3.07 E:1 [G] 7.07
A:337 [TRP] E:58 [A] 3.23 7.07
A:337 [TRP] E:59 [C] 3.68 7.07
A:337 [TRP] E:60 [A] 4.15 7.07
A:338 [GLU] E:58 [A] 3.25 36.36
A:338 [GLU] E:59 [C] 3.03 36.36
A:339 [LYS] E:58 [A] 3.31 47.49
A:339 [LYS] E:59 [C] 4.96 47.49

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*Conservation was calculated using Rate4Site
NB: conservation is missing (completly white) for a very small minority of cases in which no homologous sequences were found (e.g. synthetic proteins 7D3J_A & 7EU9_A)

Properties of this interface

Interolog group ID Structure ID Structure description
 UniProt ID
 		ECOD label(s)
 		RFAM label(s)
 		Is ribosome? RCSB PDB link
group107 3HAX_A_E,F A: Probable tRNA pseudouridine synthase b, Pyrococcus furiosus (genetically engineered) E: H/aca RNA F: N/A Q7LWY0 PUA domain & Pseudouridine synthase ✘

Interologs

Total number of interologs for this interface: 4

Interface 1 Interface 2 Percentage conservation
 		Interface TM-score
 		Interface RMSD
 		Percentage identity
 		Common ECOD label(s)
 		Common RFAM label(s)
 		Explore both interfaces
3HAX_A_E,F 3LWR_A_D,E 0.92 0.99 0.43 0.44 PUA domain & Pseudouridine synthase compare
3HAX_A_E,F 3HJW_A_D,E 0.94 0.99 0.57 0.42 PUA domain & Pseudouridine synthase compare
2HVY_A_E 3HAX_A_E,F 0.79 0.95 0.92 0.85 PUA domain & Pseudouridine synthase compare
1K8W_A_B 3HAX_A_E,F 0.84 0.76 1.22 0.15 PUA domain & Pseudouridine synthase compare