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All interfaces > All interologs > Interface groups > group107 > 3HJW_A_D,E

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Licorice
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RNA

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Licorice
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Chain
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Hydrophobicity
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Conservation*

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Rim - Core

Contacts -

3HJW_A
3HJW_D,E
Distance
Base Pair
Hbond nuc:res
Base Stacking
Residue conservation
A:25 [ASP] D:58 [A] 4.99 16.3
A:59 [GLY] D:17 [G] 5.0 D:39 [U] 89.31
A:59 [GLY] D:18 [C] 3.44 D:38 [G] 89.31
A:60 [PRO] D:18 [C] 3.48 D:38 [G] 71.18
A:61 [THR] D:17 [G] 4.87 D:39 [U] 91.65
A:61 [THR] D:40 [U] 3.4 D:16 [C] 91.65
A:61 [THR] E:69 [G] 4.06 91.65
A:63 [HIS] D:40 [U] 3.5 D:16 [C] base:SC 76.02
A:63 [HIS] D:41 [C] 3.27 E:67 [G] base/AA stacks 76.02
A:63 [HIS] E:67 [G] 4.42 D:41 [C] 76.02
A:63 [HIS] E:69 [G] 4.18 76.02
A:63 [HIS] E:70 [C] 3.06 D:15 [G] 76.02
A:64 [GLU] D:17 [G] 2.71 D:39 [U] base:SC, base:SC 70.99
A:64 [GLU] D:18 [C] 4.49 D:38 [G] 70.99
A:64 [GLU] D:39 [U] 2.96 D:17 [G] sugar:SC 70.99
A:64 [GLU] D:40 [U] 3.37 D:16 [C] base/AA stacks 70.99
A:66 [VAL] D:41 [C] 3.27 E:67 [G] 83.05
A:67 [ALA] D:40 [U] 3.82 D:16 [C] 50.76
A:67 [ALA] D:41 [C] 4.56 E:67 [G] 50.76
A:70 [LYS] D:41 [C] 3.99 E:67 [G] 84.51
A:70 [LYS] D:42 [G] 2.55 E:66 [C] 84.51
A:76 [GLU] D:42 [G] 4.45 E:66 [C] 65.55
A:77 [LYS] D:42 [G] 3.62 E:66 [C] 83.5
A:77 [LYS] D:43 [C] 2.99 E:65 [G] 83.5
A:78 [ALA] D:41 [C] 2.75 E:67 [G] sugar:BB 75.33
A:78 [ALA] D:42 [G] 2.96 E:66 [C] 75.33
A:79 [GLY] D:41 [C] 3.32 E:67 [G] 95.1
A:79 [GLY] D:42 [G] 3.47 E:66 [C] 95.1
A:80 [HIS] D:41 [C] 3.26 E:67 [G] sugar:BB base/AA stacks 97.3
A:80 [HIS] D:42 [G] 4.5 E:66 [C] 97.3
A:80 [HIS] E:67 [G] 3.13 D:41 [C] base:BB 97.3
A:81 [GLY] E:67 [G] 3.32 D:41 [C] 59.89
A:82 [GLY] E:67 [G] 3.32 D:41 [C] 97.17
A:82 [GLY] E:68 [FHU] 3.18 97.17
A:83 [THR] E:67 [G] 3.43 D:41 [C] sugar:BB 98.55
A:83 [THR] E:68 [FHU] 3.11 98.55
A:83 [THR] E:69 [G] 3.99 98.55
A:83 [THR] E:70 [C] 4.38 D:15 [G] 98.55
A:84 [LEU] E:68 [FHU] 3.96 96.56
A:84 [LEU] E:69 [G] 4.89 96.56
A:85 [ASP] E:68 [FHU] 2.37 base:BB, sugar:SC base/AA stacks 98.28
A:85 [ASP] E:69 [G] 3.23 98.28
A:86 [PRO] D:17 [G] 4.39 D:39 [U] 96.85
A:86 [PRO] E:69 [G] 3.6 96.85
A:88 [VAL] E:68 [FHU] 4.01 94.36
A:100 [THR] D:42 [G] 3.39 E:66 [C] 91.97
A:100 [THR] D:43 [C] 3.84 E:65 [G] 91.97
A:101 [ARG] D:5 [C] 2.89 D:50 [G] 84.99
A:101 [ARG] D:6 [A] 3.7 D:49 [U] 84.99
A:101 [ARG] D:43 [C] 3.8 E:65 [G] 84.99
A:101 [ARG] D:44 [U] 3.86 E:64 [A] 84.99
A:103 [VAL] D:42 [G] 3.83 E:66 [C] 54.23
A:103 [VAL] D:43 [C] 3.59 E:65 [G] 54.23
A:104 [GLN] D:43 [C] 3.25 E:65 [G] 57.78
A:104 [GLN] D:44 [U] 3.01 E:64 [A] 57.78
A:107 [LEU] D:42 [G] 3.82 E:66 [C] 26.17
A:107 [LEU] D:43 [C] 4.16 E:65 [G] 26.17
A:107 [LEU] E:66 [C] 4.99 D:42 [G] 26.17
A:107 [LEU] E:67 [G] 3.54 D:41 [C] 26.17
A:107 [LEU] E:68 [FHU] 4.9 26.17
A:111 [LYS] E:67 [G] 4.49 D:41 [C] 97.83
A:111 [LYS] E:68 [FHU] 3.27 97.83
A:113 [TYR] E:68 [FHU] 3.16 98.52
A:145 [LEU] E:70 [C] 4.74 D:15 [G] 54.91
A:145 [LEU] E:71 [G] 4.84 D:14 [C] 54.91
A:146 [ARG] D:15 [G] 4.87 E:70 [C] 68.6
A:146 [ARG] D:16 [C] 3.62 D:40 [U] 68.6
A:146 [ARG] E:69 [G] 3.35 base/AA stacks 68.6
A:146 [ARG] E:70 [C] 3.27 D:15 [G] 68.6
A:146 [ARG] E:71 [G] 4.91 D:14 [C] 68.6
A:147 [SER] E:69 [G] 3.89 98.79
A:147 [SER] E:70 [C] 3.81 D:15 [G] 98.79
A:147 [SER] E:71 [G] 3.7 D:14 [C] 98.79
A:148 [ALA] E:66 [C] 4.35 D:42 [G] 95.87
A:148 [ALA] E:67 [G] 4.02 D:41 [C] 95.87
A:148 [ALA] E:69 [G] 3.23 95.87
A:148 [ALA] E:70 [C] 3.36 D:15 [G] 95.87
A:149 [VAL] E:66 [C] 3.76 D:42 [G] 84.85
A:149 [VAL] E:67 [G] 3.43 D:41 [C] 84.85
A:149 [VAL] E:69 [G] 4.69 84.85
A:150 [LYS] E:64 [A] 4.85 D:44 [U] 73.01
A:150 [LYS] E:65 [G] 2.76 D:43 [C] 73.01
A:150 [LYS] E:66 [C] 3.05 D:42 [G] 73.01
A:152 [ARG] E:65 [G] 3.84 D:43 [C] 47.79
A:152 [ARG] E:66 [C] 4.91 D:42 [G] 47.79
A:154 [ARG] E:66 [C] 4.07 D:42 [G] 94.36
A:154 [ARG] E:67 [G] 2.9 D:41 [C] 94.36
A:156 [ARG] E:66 [C] 4.45 D:42 [G] 90.11
A:156 [ARG] E:67 [G] 2.7 D:41 [C] 90.11
A:178 [GLU] E:68 [FHU] 4.6 89.87
A:179 [ALA] E:67 [G] 3.69 D:41 [C] 67.74
A:179 [ALA] E:68 [FHU] 3.37 67.74
A:180 [GLY] E:67 [G] 3.31 D:41 [C] 98.04
A:180 [GLY] E:68 [FHU] 2.73 98.04
A:181 [THR] E:68 [FHU] 3.46 base:BB 96.77
A:182 [TYR] E:68 [FHU] 3.5 97.89
A:182 [TYR] E:69 [G] 2.69 97.89
A:183 [ILE] E:68 [FHU] 2.74 base:BB 87.91
A:184 [ARG] E:68 [FHU] 3.36 base:BB 98.97
A:200 [MET] E:68 [FHU] 3.39 82.22
A:203 [LEU] E:68 [FHU] 3.69 98.87
A:205 [ARG] E:67 [G] 4.71 D:41 [C] 98.97
A:205 [ARG] E:68 [FHU] 2.43 98.97
A:259 [LYS] D:57 [A] 3.69 57.94
A:259 [LYS] D:58 [A] 2.57 57.94
A:261 [SER] D:57 [A] 2.61 sugar:SC 56.38
A:261 [SER] D:58 [A] 3.06 56.38
A:262 [ALA] D:57 [A] 3.6 49.06
A:265 [ALA] D:55 [A] 3.4 49.84
A:265 [ALA] D:57 [A] 3.58 49.84
A:266 [VAL] D:57 [A] 4.68 63.48
A:267 [THR] D:4 [C] 3.83 D:51 [G] 49.95
A:268 [HIS] D:3 [G] 2.78 D:52 [C] base:BB 68.02
A:268 [HIS] D:4 [C] 4.51 D:51 [G] 68.02
A:268 [HIS] D:52 [C] 3.97 D:3 [G] sugar:SC 68.02
A:268 [HIS] D:53 [C] 3.5 D:2 [G] sugar:SC 68.02
A:268 [HIS] D:55 [A] 3.04 68.02
A:269 [GLY] D:3 [G] 2.74 D:52 [C] sugar:BB 98.95
A:269 [GLY] D:4 [C] 3.51 D:51 [G] 98.95
A:269 [GLY] D:55 [A] 3.55 98.95
A:270 [ALA] D:3 [G] 4.91 D:52 [C] 56.58
A:270 [ALA] D:55 [A] 3.48 56.58
A:270 [ALA] D:57 [A] 3.57 56.58
A:271 [ASP] D:3 [G] 4.65 D:52 [C] 45.98
A:271 [ASP] D:57 [A] 3.04 base:BB 45.98
A:272 [LEU] D:57 [A] 3.96 62.74
A:273 [ALA] D:56 [C] 3.5 0.74
A:273 [ALA] D:57 [A] 2.99 base:BB 0.74
A:274 [VAL] D:57 [A] 4.94 24.9
A:275 [PRO] D:56 [C] 3.86 38.53
A:275 [PRO] D:57 [A] 3.47 38.53
A:275 [PRO] D:58 [A] 3.86 38.53
A:276 [GLY] D:57 [A] 3.25 38.03
A:316 [THR] D:56 [C] 4.84 44.46
A:317 [LYS] D:56 [C] 3.25 33.47
A:318 [GLY] D:56 [C] 2.94 base:BB, base:BB 58.67
A:319 [ILE] D:56 [C] 3.67 1.8
A:323 [VAL] D:3 [G] 4.06 D:52 [C] 55.66
A:323 [VAL] D:4 [C] 3.5 D:51 [G] 55.66
A:324 [GLU] D:4 [C] 3.66 D:51 [G] 39.67
A:324 [GLU] D:5 [C] 3.87 D:50 [G] 39.67
A:325 [LYS] D:4 [C] 4.42 D:51 [G] 71.45
A:325 [LYS] D:5 [C] 3.23 D:50 [G] 71.45
A:325 [LYS] D:44 [U] 2.62 E:64 [A] 71.45
A:325 [LYS] D:45 [C] 3.16 E:63 [G] 71.45
A:326 [VAL] D:4 [C] 3.66 D:51 [G] 89.42
A:326 [VAL] D:5 [C] 2.74 D:50 [G] 89.42
A:330 [ARG] D:3 [G] 4.08 D:52 [C] 6.0
A:330 [ARG] D:4 [C] 2.76 D:51 [G] base:SC 6.0
A:330 [ARG] D:5 [C] 3.87 D:50 [G] 6.0
A:330 [ARG] D:51 [G] 3.65 D:4 [C] 6.0
A:330 [ARG] D:52 [C] 2.82 D:3 [G] base:SC, sugar:SC 6.0
A:330 [ARG] D:53 [C] 4.49 D:2 [G] 6.0
A:335 [LYS] D:52 [C] 4.77 D:3 [G] 46.32
A:335 [LYS] D:53 [C] 3.25 D:2 [G] 46.32
A:336 [LEU] D:58 [A] 3.53 13.43
A:337 [TRP] D:53 [C] 3.53 D:2 [G] 32.71
A:337 [TRP] D:54 [C] 2.82 D:1 [G] 32.71
A:337 [TRP] D:55 [A] 3.28 32.71
A:337 [TRP] D:57 [A] 4.88 32.71
A:337 [TRP] D:58 [A] 3.2 32.71

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*Conservation was calculated using Rate4Site
NB: conservation is missing (completly white) for a very small minority of cases in which no homologous sequences were found (e.g. synthetic proteins 7D3J_A & 7EU9_A)

Properties of this interface

Interolog group ID Structure ID Structure description
 UniProt ID
 		ECOD label(s)
 		RFAM label(s)
 		Is ribosome? RCSB PDB link
group107 3HJW_A_D,E A: Pseudouridine synthase cbf5, Pyrococcus furiosus (genetically engineered) D: RNA (58-mer) E: N/A Q7LWY0 PUA domain & Pseudouridine synthase Pab160 RNA ✘

Interologs

Total number of interologs for this interface: 5

Interface 1 Interface 2 Percentage conservation
 		Interface TM-score
 		Interface RMSD
 		Percentage identity
 		Common ECOD label(s)
 		Common RFAM label(s)
 		Explore both interfaces
2HVY_A_E 3HJW_A_D,E 0.77 0.93 1.3 0.5 PUA domain & Pseudouridine synthase compare
2AB4_A_B 3HJW_A_D,E 0.81 0.78 1.4 0.15 PUA domain & Pseudouridine synthase compare
1K8W_A_B 3HJW_A_D,E 0.82 0.76 1.31 0.15 PUA domain & Pseudouridine synthase compare
3HAX_A_E,F 3HJW_A_D,E 0.94 0.99 0.57 0.42 PUA domain & Pseudouridine synthase compare
3HJW_A_D,E 3LWR_A_D,E 0.97 0.99 0.47 0.93 PUA domain & Pseudouridine synthase Pab160 RNA compare