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All interfaces > All interologs > Interface groups > group107 > 3LWR_A_D,E

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Licorice
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RNA

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Licorice
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Chain
Chain (with hetatm)
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Hydrophobicity
Electrostatics (surface only)
Conservation*

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Rim - Core

Contacts -

3LWR_A
3LWR_D,E
Distance
Base Pair
Hbond nuc:res
Base Stacking
Residue conservation
A:59 [GLY] D:17 [G] 4.69 D:39 [U] 93.95
A:59 [GLY] D:18 [C] 3.55 D:38 [G] 93.95
A:60 [PRO] D:18 [C] 3.65 D:38 [G] 67.64
A:61 [THR] D:17 [G] 4.87 D:39 [U] 92.71
A:61 [THR] D:40 [U] 3.53 D:16 [C] 92.71
A:61 [THR] E:69 [G] 4.54 92.71
A:63 [HIS] D:40 [U] 3.32 D:16 [C] sugar:SC 74.63
A:63 [HIS] D:41 [C] 3.17 E:67 [G] base/AA stacks 74.63
A:63 [HIS] E:67 [G] 4.1 D:41 [C] 74.63
A:63 [HIS] E:69 [G] 2.86 74.63
A:63 [HIS] E:70 [C] 2.75 D:15 [G] 74.63
A:64 [GLU] D:17 [G] 3.14 D:39 [U] base:SC, base:SC 72.7
A:64 [GLU] D:18 [C] 4.36 D:38 [G] 72.7
A:64 [GLU] D:38 [G] 4.79 D:18 [C] 72.7
A:64 [GLU] D:39 [U] 2.78 D:17 [G] sugar:SC 72.7
A:64 [GLU] D:40 [U] 3.56 D:16 [C] base/AA stacks 72.7
A:66 [VAL] D:41 [C] 3.66 E:67 [G] 84.87
A:67 [ALA] D:40 [U] 4.3 D:16 [C] 50.58
A:67 [ALA] D:41 [C] 4.58 E:67 [G] 50.58
A:70 [LYS] D:41 [C] 3.55 E:67 [G] 85.94
A:70 [LYS] D:42 [G] 2.54 E:66 [C] 85.94
A:76 [GLU] D:42 [G] 4.36 E:66 [C] 66.67
A:77 [LYS] D:6 [A] 4.98 D:49 [U] 87.02
A:77 [LYS] D:7 [C] 4.84 D:48 [G] 87.02
A:77 [LYS] D:42 [G] 3.83 E:66 [C] 87.02
A:77 [LYS] D:43 [C] 2.93 E:65 [G] 87.02
A:78 [ALA] D:41 [C] 2.68 E:67 [G] sugar:BB 80.96
A:78 [ALA] D:42 [G] 3.09 E:66 [C] 80.96
A:79 [GLY] D:41 [C] 3.44 E:67 [G] 95.24
A:79 [GLY] D:42 [G] 3.78 E:66 [C] 95.24
A:80 [HIS] D:41 [C] 3.38 E:67 [G] base/AA stacks 97.09
A:80 [HIS] D:42 [G] 4.93 E:66 [C] 97.09
A:80 [HIS] E:67 [G] 4.51 D:41 [C] 97.09
A:81 [GLY] E:67 [G] 3.84 D:41 [C] 68.99
A:82 [GLY] E:67 [G] 3.3 D:41 [C] 97.74
A:83 [THR] E:67 [G] 3.32 D:41 [C] sugar:BB 98.95
A:83 [THR] E:69 [G] 3.16 98.95
A:85 [ASP] E:69 [G] 3.6 98.76
A:86 [PRO] D:17 [G] 4.6 D:39 [U] 97.36
A:86 [PRO] E:69 [G] 4.0 97.36
A:100 [THR] D:42 [G] 3.52 E:66 [C] 92.9
A:100 [THR] D:43 [C] 3.84 E:65 [G] 92.9
A:101 [ARG] D:5 [C] 2.67 D:50 [G] 82.95
A:101 [ARG] D:6 [A] 3.87 D:49 [U] 82.95
A:101 [ARG] D:43 [C] 3.69 E:65 [G] 82.95
A:101 [ARG] D:44 [U] 3.88 E:64 [A] 82.95
A:103 [VAL] D:42 [G] 4.11 E:66 [C] 63.86
A:103 [VAL] D:43 [C] 4.02 E:65 [G] 63.86
A:104 [GLN] D:43 [C] 3.24 E:65 [G] 53.79
A:104 [GLN] D:44 [U] 2.89 E:64 [A] 53.79
A:107 [LEU] D:43 [C] 4.45 E:65 [G] 34.49
A:107 [LEU] E:67 [G] 3.39 D:41 [C] 34.49
A:154 [ARG] E:66 [C] 4.63 D:42 [G] 95.35
A:154 [ARG] E:67 [G] 2.8 D:41 [C] 95.35
A:180 [GLY] E:67 [G] 4.85 D:41 [C] 98.44
A:182 [TYR] E:67 [G] 4.41 D:41 [C] 97.58
A:259 [LYS] D:57 [A] 3.92 59.84
A:259 [LYS] D:58 [A] 3.24 59.84
A:261 [SER] D:57 [A] 2.67 sugar:SC 62.86
A:261 [SER] D:58 [A] 2.9 62.86
A:262 [ALA] D:57 [A] 3.49 59.52
A:265 [ALA] D:55 [A] 3.46 61.43
A:265 [ALA] D:57 [A] 3.41 61.43
A:266 [VAL] D:57 [A] 4.61 67.64
A:267 [THR] D:4 [C] 3.77 D:51 [G] 55.39
A:268 [HIS] D:3 [G] 2.91 D:52 [C] base:BB 75.83
A:268 [HIS] D:4 [C] 4.48 D:51 [G] 75.83
A:268 [HIS] D:52 [C] 3.73 D:3 [G] sugar:SC 75.83
A:268 [HIS] D:53 [C] 3.54 D:2 [G] sugar:SC 75.83
A:268 [HIS] D:55 [A] 3.07 75.83
A:269 [GLY] D:3 [G] 2.49 D:52 [C] sugar:BB 98.81
A:269 [GLY] D:4 [C] 3.17 D:51 [G] 98.81
A:269 [GLY] D:55 [A] 3.56 98.81
A:270 [ALA] D:3 [G] 4.66 D:52 [C] 60.97
A:270 [ALA] D:55 [A] 3.49 60.97
A:270 [ALA] D:57 [A] 3.73 60.97
A:271 [ASP] D:3 [G] 4.9 D:52 [C] 44.04
A:271 [ASP] D:57 [A] 2.89 base:BB 44.04
A:272 [LEU] D:57 [A] 3.84 62.28
A:273 [ALA] D:56 [C] 3.3 5.99
A:273 [ALA] D:57 [A] 2.85 base:BB 5.99
A:274 [VAL] D:57 [A] 4.89 20.66
A:275 [PRO] D:56 [C] 3.75 42.04
A:275 [PRO] D:57 [A] 3.61 42.04
A:275 [PRO] D:58 [A] 4.17 42.04
A:276 [GLY] D:57 [A] 3.29 43.75
A:317 [LYS] D:56 [C] 3.2 34.16
A:318 [GLY] D:56 [C] 2.88 base:BB 61.08
A:319 [ILE] D:56 [C] 3.57 4.86
A:322 [ASP] D:4 [C] 4.98 D:51 [G] 62.31
A:323 [VAL] D:3 [G] 4.25 D:52 [C] 51.59
A:323 [VAL] D:4 [C] 3.44 D:51 [G] 51.59
A:324 [GLU] D:4 [C] 3.59 D:51 [G] 39.72
A:324 [GLU] D:5 [C] 3.8 D:50 [G] 39.72
A:324 [GLU] D:45 [C] 3.82 E:63 [G] 39.72
A:325 [LYS] D:4 [C] 4.54 D:51 [G] 72.92
A:325 [LYS] D:5 [C] 3.45 D:50 [G] 72.92
A:325 [LYS] D:44 [U] 2.75 E:64 [A] 72.92
A:325 [LYS] D:45 [C] 3.03 E:63 [G] 72.92
A:326 [VAL] D:4 [C] 3.74 D:51 [G] 88.15
A:326 [VAL] D:5 [C] 2.99 D:50 [G] 88.15
A:330 [ARG] D:3 [G] 3.92 D:52 [C] 2.77
A:330 [ARG] D:4 [C] 2.79 D:51 [G] base:SC, sugar:SC 2.77
A:330 [ARG] D:5 [C] 4.02 D:50 [G] 2.77
A:330 [ARG] D:51 [G] 3.93 D:4 [C] 2.77
A:330 [ARG] D:52 [C] 2.62 D:3 [G] base:SC, sugar:SC 2.77
A:330 [ARG] D:53 [C] 4.53 D:2 [G] 2.77
A:335 [LYS] D:53 [C] 3.44 D:2 [G] 57.14
A:336 [LEU] D:58 [A] 3.37 13.19
A:337 [TRP] D:53 [C] 3.49 D:2 [G] 45.86
A:337 [TRP] D:54 [C] 2.91 D:1 [G] 45.86
A:337 [TRP] D:55 [A] 3.21 45.86
A:337 [TRP] D:58 [A] 3.54 45.86

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*Conservation was calculated using Rate4Site
NB: conservation is missing (completly white) for a very small minority of cases in which no homologous sequences were found (e.g. synthetic proteins 7D3J_A & 7EU9_A)

Properties of this interface

Interolog group ID Structure ID Structure description
 UniProt ID
 		ECOD label(s)
 		RFAM label(s)
 		Is ribosome? RCSB PDB link
group107 3LWR_A_D,E A: Pseudouridine synthase cbf5, Pyrococcus furiosus (genetically engineered) D: H/aca RNA E: N/A Q7LWY0 PUA domain & Pseudouridine synthase Pab160 RNA ✘

Interologs

Total number of interologs for this interface: 3

Interface 1 Interface 2 Percentage conservation
 		Interface TM-score
 		Interface RMSD
 		Percentage identity
 		Common ECOD label(s)
 		Common RFAM label(s)
 		Explore both interfaces
2HVY_A_E 3LWR_A_D,E 0.78 0.94 0.97 0.5 PUA domain & Pseudouridine synthase compare
3HAX_A_E,F 3LWR_A_D,E 0.92 0.99 0.43 0.44 PUA domain & Pseudouridine synthase compare
3HJW_A_D,E 3LWR_A_D,E 0.97 0.99 0.47 0.93 PUA domain & Pseudouridine synthase Pab160 RNA compare