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All interfaces > All interologs > Interface groups > group108 > 1VQ8_X_0 vs 1YHQ_X_0

Interface analysis


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Licorice
Surface

RNA

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Licorice
Surface

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Structure (with hetatm)
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Common contacts -

1VQ8_X
1VQ8_0
1YHQ_X
1YHQ_0
Conserved?
X:36 [HIS] 0:2855 [G] X:36 [HIS] 0:2855 [G] ✔
X:50 [LEU] 0:1384 [C] X:50 [LEU] 0:1384 [C] ✔
X:50 [LEU] 0:1385 [G] X:50 [LEU] 0:1385 [G] ✔
X:40 [HIS] 0:2904 [U] X:40 [HIS] 0:2904 [U] ✔
X:40 [HIS] 0:2905 [A] X:40 [HIS] 0:2905 [A] ✔
X:48 [VAL] 0:1385 [G] X:48 [VAL] 0:1385 [G] ✔
X:24 [LYS] 0:2044 [G] X:24 [LYS] 0:2044 [G] ✔
X:30 [MET] 0:1383 [U] X:30 [MET] 0:1383 [U] ✔
X:30 [MET] 0:1384 [C] X:30 [MET] 0:1384 [C] ✔
X:68 [SER] 0:2894 [C] X:68 [SER] 0:2894 [C] ✔
X:68 [SER] 0:2895 [C] X:68 [SER] 0:2895 [C] ✔
X:19 [ALA] 0:1730 [G] X:19 [ALA] 0:1730 [G] ✔
X:19 [ALA] 0:1731 [C] X:19 [ALA] 0:1731 [C] ✔
X:11 [THR] 0:2855 [G] X:11 [THR] 0:2855 [G] ✔
X:11 [THR] 0:2856 [A] X:11 [THR] 0:2856 [A] ✔
X:11 [THR] 0:2857 [C] X:11 [THR] 0:2857 [C] ✔
X:20 [GLU] 0:1731 [C] X:20 [GLU] 0:1731 [C] ✔
X:20 [GLU] 0:2043 [U] X:20 [GLU] 0:2043 [U] ✔
X:69 [LYS] 0:2857 [C] X:69 [LYS] 0:2857 [C] ✔
X:51 [ASP] 0:1384 [C] X:51 [ASP] 0:1384 [C] ✔
X:60 [ALA] 0:1401 [G] X:60 [ALA] 0:1401 [G] ✔
X:60 [ALA] 0:2743 [A] X:60 [ALA] 0:2743 [A] ✔
X:59 [TRP] 0:1381 [A] X:59 [TRP] 0:1381 [A] ✔
X:59 [TRP] 0:1382 [G] X:59 [TRP] 0:1382 [G] ✔
X:59 [TRP] 0:1383 [U] X:59 [TRP] 0:1383 [U] ✔
X:59 [TRP] 0:1400 [C] X:59 [TRP] 0:1400 [C] ✔
X:59 [TRP] 0:1401 [G] X:59 [TRP] 0:1401 [G] ✔
X:56 [GLU] 0:1399 [A] X:56 [GLU] 0:1399 [A] ✔
X:56 [GLU] 0:1400 [C] X:56 [GLU] 0:1400 [C] ✔
X:34 [ARG] 0:1384 [C] X:34 [ARG] 0:1384 [C] ✔
X:34 [ARG] 0:1385 [G] X:34 [ARG] 0:1385 [G] ✔
X:18 [ARG] 0:1730 [G] X:18 [ARG] 0:1730 [G] ✔
X:18 [ARG] 0:2727 [A] X:18 [ARG] 0:2727 [A] ✔
X:18 [ARG] 0:2895 [C] X:18 [ARG] 0:2895 [C] ✔
X:18 [ARG] 0:2896 [A] X:18 [ARG] 0:2896 [A] ✔
X:23 [HIS] 0:1380 [U] X:23 [HIS] 0:1380 [U] ✔
X:23 [HIS] 0:2043 [U] X:23 [HIS] 0:2043 [U] ✔
X:23 [HIS] 0:2044 [G] X:23 [HIS] 0:2044 [G] ✔
X:23 [HIS] 0:2748 [G] X:23 [HIS] 0:2748 [G] ✔
X:22 [ASN] 0:2042 [U] X:22 [ASN] 0:2042 [U] ✔
X:22 [ASN] 0:2043 [U] X:22 [ASN] 0:2043 [U] ✔
X:22 [ASN] 0:2726 [U] X:22 [ASN] 0:2726 [U] ✔
X:22 [ASN] 0:2727 [A] X:22 [ASN] 0:2727 [A] ✔
X:22 [ASN] 0:2749 [U] X:22 [ASN] 0:2749 [U] ✔
X:21 [PRO] 0:2043 [U] X:21 [PRO] 0:2043 [U] ✔
X:21 [PRO] 0:2044 [G] X:21 [PRO] 0:2044 [G] ✔
X:8 [ARG] 0:2904 [U] X:8 [ARG] 0:2904 [U] ✔
X:62 [GLY] 0:1401 [G] X:62 [GLY] 0:1401 [G] ✔
X:62 [GLY] 0:1402 [G] X:62 [GLY] 0:1402 [G] ✔
X:62 [GLY] 0:2744 [G] X:62 [GLY] 0:2744 [G] ✔
X:39 [LYS] 0:2834 [G] X:39 [LYS] 0:2834 [G] ✔
X:39 [LYS] 0:2835 [C] X:39 [LYS] 0:2835 [C] ✔
X:39 [LYS] 0:2905 [A] X:39 [LYS] 0:2905 [A] ✔
X:25 [ARG] 0:2728 [C] X:25 [ARG] 0:2728 [C] ✔
X:28 [LYS] 0:1728 [G] X:28 [LYS] 0:1728 [G] ✔
X:28 [LYS] 0:1729 [A] X:28 [LYS] 0:1729 [A] ✔
X:65 [ASN] 0:2744 [G] X:65 [ASN] 0:2744 [G] ✔
X:65 [ASN] 0:2745 [C] X:65 [ASN] 0:2745 [C] ✔
X:52 [PRO] 0:1384 [C] X:52 [PRO] 0:1384 [C] ✔
X:52 [PRO] 0:1385 [G] X:52 [PRO] 0:1385 [G] ✔
X:52 [PRO] 0:1398 [G] X:52 [PRO] 0:1398 [G] ✔
X:27 [ASP] 0:1382 [G] X:27 [ASP] 0:1382 [G] ✔
X:27 [ASP] 0:1383 [U] X:27 [ASP] 0:1383 [U] ✔
X:15 [ARG] 0:1730 [G] X:15 [ARG] 0:1730 [G] ✔
X:15 [ARG] 0:2855 [G] X:15 [ARG] 0:2855 [G] ✔
X:15 [ARG] 0:2856 [A] X:15 [ARG] 0:2856 [A] ✔
X:15 [ARG] 0:2896 [A] X:15 [ARG] 0:2896 [A] ✔
X:16 [ASP] 0:1730 [G] X:16 [ASP] 0:1730 [G] ✔
X:42 [SER] 0:2905 [A] X:42 [SER] 0:2905 [A] ✔
X:49 [ARG] 0:1385 [G] X:49 [ARG] 0:1385 [G] ✔
X:49 [ARG] 0:1386 [G] X:49 [ARG] 0:1386 [G] ✔
X:61 [ARG] 0:2743 [A] X:61 [ARG] 0:2743 [A] ✔
X:61 [ARG] 0:2744 [G] X:61 [ARG] 0:2744 [G] ✔
X:31 [ILE] 0:1728 [G] X:31 [ILE] 0:1728 [G] ✔
X:63 [ARG] 0:1380 [U] X:63 [ARG] 0:1380 [U] ✔
X:63 [ARG] 0:1381 [A] X:63 [ARG] 0:1381 [A] ✔
X:63 [ARG] 0:1382 [G] X:63 [ARG] 0:1382 [G] ✔
X:63 [ARG] 0:1401 [G] X:63 [ARG] 0:1401 [G] ✔
X:55 [ASN] 0:1383 [U] X:55 [ASN] 0:1383 [U] ✔
X:55 [ASN] 0:1384 [C] X:55 [ASN] 0:1384 [C] ✔
X:55 [ASN] 0:1399 [A] X:55 [ASN] 0:1399 [A] ✔
X:55 [ASN] 0:1400 [C] X:55 [ASN] 0:1400 [C] ✔
X:13 [PRO] 0:2855 [G] X:13 [PRO] 0:2855 [G] ✔
X:13 [PRO] 0:2856 [A] X:13 [PRO] 0:2856 [A] ✔
X:69 [LYS] 0:2895 [C] X:69 [LYS] 0:2895 [C] ❌ 1YHQ_X_0
X:22 [ASN] 0:2748 [G] X:22 [ASN] 0:2748 [G] ❌ 1YHQ_X_0
X:21 [PRO] 0:1731 [C] X:21 [PRO] 0:1731 [C] ❌ 1VQ8_X_0
X:25 [ARG] 0:2727 [A] X:25 [ARG] 0:2727 [A] ❌ 1VQ8_X_0
X:8 [ARG] 0:2905 [A] X:8 [ARG] 0:2905 [A] ❌ 1VQ8_X_0

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Properties of this pair

Common ECOD label(s)
 Common RFAM label(s)
 Interface TM-score
 Interface RMSD
 Percentage identity
 Protein TM-score
 RNA TM-score
 Protein coverage
 RNA coverage
 Percentage conservation
 Apolar conservation
 H-bond conservation
 Percentage switching out
Ribosomal protein L31e/gp120 outer domain Archaeal large subunit ribosomal RNA 1.0 0.21 1.00 1.0 1.0 1.0 1.0 0.99 0.99 0.81 0.00


Other pairs involving 1VQ8_X_0 or 1YHQ_X_0

Total number of entries: 9

Interface 1 Interface 2 Percentage conservation
 		Interface TM-score
 		Interface RMSD
 		Percentage identity
 		Common ECOD label(s)
 		Common RFAM label(s)
 		Explore both interfaces
1VQ8_X_0 1YHQ_X_0 0.99 1.0 0.21 1.0 Ribosomal protein L31e/gp120 outer domain Archaeal large subunit ribosomal RNA compare
1VQ8_X_0 7O7Y_Bd_B5 0.66 0.94 1.78 0.35 Ribosomal protein L31e/gp120 outer domain compare
1VQ8_X_0 6AZ3_e_2 0.33 0.79 2.67 0.12 Ribosomal protein L31e/gp120 outer domain compare
1VQ8_X_0 6AZ3_e_4 0.47 0.76 2.15 0.15 Ribosomal protein L31e/gp120 outer domain compare
1VQ8_X_0 6AZ3_e_1 0.79 0.75 1.28 0.05 Ribosomal protein L31e/gp120 outer domain compare
1YHQ_X_0 6AZ3_e_1 0.80 0.75 1.26 0.05 Ribosomal protein L31e/gp120 outer domain compare
1YHQ_X_0 6AZ3_e_4 0.47 0.76 2.19 0.15 Ribosomal protein L31e/gp120 outer domain compare
1YHQ_X_0 7O7Y_Bd_B5 0.64 0.94 1.83 0.35 Ribosomal protein L31e/gp120 outer domain compare
1YHQ_X_0 6AZ3_e_2 0.34 0.79 2.69 0.12 Ribosomal protein L31e/gp120 outer domain compare