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All interfaces > All interologs > Interface groups > group108 > 1YHQ_X_0

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Protein

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Licorice
Surface

RNA

Cartoon
Licorice
Surface

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Chain
Chain (with hetatm)
Chainbow
Hydrophobicity
Electrostatics (surface only)
Conservation*

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Rim - Core

Contacts -

1YHQ_X
1YHQ_0
Distance
Base Pair
Hbond nuc:res
Base Stacking
Residue conservation
X:8 [ARG] 0:2904 [U] 3.51 0:2854 [A] sugar:SC 77.35
X:8 [ARG] 0:2905 [A] 4.94 0:2853 [U] 77.35
X:11 [THR] 0:2855 [G] 4.67 0:2903 [C] 79.37
X:11 [THR] 0:2856 [A] 3.52 0:2901 [C] 79.37
X:11 [THR] 0:2857 [C] 3.8 0:2900 [G] 79.37
X:13 [PRO] 0:2855 [G] 3.67 0:2903 [C] 85.15
X:13 [PRO] 0:2856 [A] 3.6 0:2901 [C] 85.15
X:15 [ARG] 0:1730 [G] 3.98 68.62
X:15 [ARG] 0:2855 [G] 3.57 0:2903 [C] 68.62
X:15 [ARG] 0:2856 [A] 2.62 0:2901 [C] 68.62
X:15 [ARG] 0:2896 [A] 2.59 0:2756 [U] 68.62
X:16 [ASP] 0:1730 [G] 3.04 base:SC 40.85
X:18 [ARG] 0:1730 [G] 2.94 base:SC, base:SC 25.23
X:18 [ARG] 0:2727 [A] 2.95 0:2755 [G] sugar:SC 25.23
X:18 [ARG] 0:2895 [C] 4.25 0:2861 [G] 25.23
X:18 [ARG] 0:2896 [A] 3.37 0:2756 [U] sugar:SC 25.23
X:19 [ALA] 0:1730 [G] 3.69 28.86
X:19 [ALA] 0:1731 [C] 3.56 28.86
X:20 [GLU] 0:1731 [C] 3.01 base:SC 54.36
X:20 [GLU] 0:2043 [U] 4.53 0:1736 [A] 54.36
X:21 [PRO] 0:1731 [C] 4.87 60.53
X:21 [PRO] 0:2043 [U] 3.19 0:1736 [A] 60.53
X:21 [PRO] 0:2044 [G] 3.53 0:1735 [C] 60.53
X:22 [ASN] 0:2042 [U] 3.81 0:1737 [A] 73.29
X:22 [ASN] 0:2043 [U] 2.93 0:1736 [A] 73.29
X:22 [ASN] 0:2726 [U] 3.05 73.29
X:22 [ASN] 0:2727 [A] 3.57 0:2755 [G] 73.29
X:22 [ASN] 0:2749 [U] 4.09 73.29
X:23 [HIS] 0:1380 [U] 3.31 base/AA stacks 25.51
X:23 [HIS] 0:2043 [U] 3.19 0:1736 [A] 25.51
X:23 [HIS] 0:2044 [G] 2.8 0:1735 [C] 25.51
X:23 [HIS] 0:2748 [G] 4.4 25.51
X:24 [LYS] 0:2044 [G] 4.09 0:1735 [C] 60.48
X:25 [ARG] 0:2727 [A] 4.97 0:2755 [G] 98.35
X:25 [ARG] 0:2728 [C] 4.16 0:2754 [G] 98.35
X:27 [ASP] 0:1382 [G] 2.56 0:1400 [C] sugar:SC 55.11
X:27 [ASP] 0:1383 [U] 3.52 0:1399 [A] 55.11
X:28 [LYS] 0:1728 [G] 4.09 0:2047 [C] 63.52
X:28 [LYS] 0:1729 [A] 2.66 63.52
X:30 [MET] 0:1383 [U] 3.69 0:1399 [A] 77.5
X:30 [MET] 0:1384 [C] 3.36 0:1398 [G] 77.5
X:31 [ILE] 0:1728 [G] 3.37 0:2047 [C] 51.95
X:34 [ARG] 0:1384 [C] 3.84 0:1398 [G] 80.28
X:34 [ARG] 0:1385 [G] 3.05 0:1397 [C] 80.28
X:36 [HIS] 0:2855 [G] 4.19 0:2903 [C] 52.18
X:39 [LYS] 0:2834 [G] 3.21 0:2846 [C] 82.82
X:39 [LYS] 0:2835 [C] 3.18 0:2845 [G] 82.82
X:39 [LYS] 0:2905 [A] 3.46 0:2853 [U] 82.82
X:40 [HIS] 0:2904 [U] 2.83 0:2854 [A] sugar:SC 91.9
X:40 [HIS] 0:2905 [A] 3.38 0:2853 [U] 91.9
X:42 [SER] 0:2905 [A] 4.7 0:2853 [U] 83.47
X:48 [VAL] 0:1385 [G] 3.73 0:1397 [C] 88.55
X:49 [ARG] 0:1385 [G] 2.59 0:1397 [C] 42.24
X:49 [ARG] 0:1386 [G] 3.21 0:1396 [C] 42.24
X:50 [LEU] 0:1384 [C] 2.57 0:1398 [G] sugar:BB 89.8
X:50 [LEU] 0:1385 [G] 3.06 0:1397 [C] 89.8
X:51 [ASP] 0:1384 [C] 3.8 0:1398 [G] 77.36
X:52 [PRO] 0:1384 [C] 3.47 0:1398 [G] 27.31
X:52 [PRO] 0:1385 [G] 4.02 0:1397 [C] 27.31
X:52 [PRO] 0:1398 [G] 4.59 0:1384 [C] 27.31
X:55 [ASN] 0:1383 [U] 2.62 0:1399 [A] base:SC, sugar:SC 98.22
X:55 [ASN] 0:1384 [C] 3.18 0:1398 [G] base/AA stacks 98.22
X:55 [ASN] 0:1399 [A] 4.1 0:1383 [U] 98.22
X:55 [ASN] 0:1400 [C] 3.94 0:1382 [G] 98.22
X:56 [GLU] 0:1399 [A] 3.02 0:1383 [U] 65.76
X:56 [GLU] 0:1400 [C] 3.41 0:1382 [G] 65.76
X:59 [TRP] 0:1381 [A] 3.47 88.57
X:59 [TRP] 0:1382 [G] 3.6 0:1400 [C] 88.57
X:59 [TRP] 0:1383 [U] 3.27 0:1399 [A] sugar:SC 88.57
X:59 [TRP] 0:1400 [C] 3.69 0:1382 [G] 88.57
X:59 [TRP] 0:1401 [G] 3.41 0:1721 [C] 88.57
X:60 [ALA] 0:1401 [G] 4.63 0:1721 [C] 45.97
X:60 [ALA] 0:2743 [A] 4.64 0:2736 [U] 45.97
X:61 [ARG] 0:2743 [A] 4.15 0:2736 [U] 84.4
X:61 [ARG] 0:2744 [G] 3.22 0:2735 [U] 84.4
X:62 [GLY] 0:1401 [G] 3.65 0:1721 [C] 93.45
X:62 [GLY] 0:1402 [G] 4.35 0:1720 [C] 93.45
X:62 [GLY] 0:2744 [G] 4.71 0:2735 [U] 93.45
X:63 [ARG] 0:1380 [U] 4.49 67.36
X:63 [ARG] 0:1381 [A] 3.13 sugar:SC base/AA stacks 67.36
X:63 [ARG] 0:1382 [G] 3.09 0:1400 [C] 67.36
X:63 [ARG] 0:1401 [G] 3.77 0:1721 [C] 67.36
X:65 [ASN] 0:2744 [G] 3.46 0:2735 [U] 63.53
X:65 [ASN] 0:2745 [C] 4.0 0:2734 [G] 63.53
X:68 [SER] 0:2894 [C] 4.45 0:2862 [G] 81.3
X:68 [SER] 0:2895 [C] 3.17 0:2861 [G] 81.3
X:69 [LYS] 0:2857 [C] 3.29 0:2900 [G] 76.1

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*Conservation was calculated using Rate4Site
NB: conservation is missing (completly white) for a very small minority of cases in which no homologous sequences were found (e.g. synthetic proteins 7D3J_A & 7EU9_A)

Properties of this interface

Interolog group ID Structure ID Structure description
 UniProt ID
 		ECOD label(s)
 		RFAM label(s)
 		Is ribosome? RCSB PDB link
group108 1YHQ_X_0 X: 50s ribosomal protein l31e, Haloarcula marismortui (natural) 0: 23s ribosomal RNA, Haloarcula marismortui (natural) P18138 Ribosomal protein L31e/gp120 outer domain Archaeal large subunit ribosomal RNA ✔

Interologs

Total number of interologs for this interface: 5

Interface 1 Interface 2 Percentage conservation
 		Interface TM-score
 		Interface RMSD
 		Percentage identity
 		Common ECOD label(s)
 		Common RFAM label(s)
 		Explore both interfaces
1VQ8_X_0 1YHQ_X_0 0.99 1.0 0.21 1.0 Ribosomal protein L31e/gp120 outer domain Archaeal large subunit ribosomal RNA compare
1YHQ_X_0 6AZ3_e_1 0.80 0.75 1.26 0.05 Ribosomal protein L31e/gp120 outer domain compare
1YHQ_X_0 6AZ3_e_4 0.47 0.76 2.19 0.15 Ribosomal protein L31e/gp120 outer domain compare
1YHQ_X_0 7O7Y_Bd_B5 0.64 0.94 1.83 0.35 Ribosomal protein L31e/gp120 outer domain compare
1YHQ_X_0 6AZ3_e_2 0.34 0.79 2.69 0.12 Ribosomal protein L31e/gp120 outer domain compare