RNAprotDB

All interfaces > All interologs > Interface groups > group108 > 1YHQ_X_0 vs 6AZ3_e_4

Interface analysis


mouse controls

Style

Protein

Cartoon
Licorice
Surface

RNA

Cartoon
Licorice
Surface

Color

Structure
Structure (with hetatm)
Chain
Chainbow

View

Focus on

Interface
RNA
Protein
All

Show chains

Interface

show interface as licorice

Common contacts -

1YHQ_X
1YHQ_0
6AZ3_e
6AZ3_4
Conserved?
X:60 [ALA] 0:2743 [A] e:132 [HIS] 4:102 [G] ✔
X:18 [ARG] 0:2727 [A] e:92 [LYS] 4:85 [C] ✔
X:22 [ASN] 0:2726 [U] e:96 [PHE] 4:84 [U] ✔
X:22 [ASN] 0:2749 [U] e:96 [PHE] 4:107 [U] ✔
X:62 [GLY] 0:2744 [G] e:134 [GLY] 4:103 [C] ✔
X:25 [ARG] 0:2727 [A] e:99 [ARG] 4:85 [C] ✔
X:65 [ASN] 0:2744 [G] e:137 [GLY] 4:103 [C] ✔
X:61 [ARG] 0:2743 [A] e:133 [LYS] 4:102 [G] ✔
X:61 [ARG] 0:2744 [G] e:133 [LYS] 4:103 [C] ✔
X:22 [ASN] 0:2727 [A] e:96 [PHE] 4:85 [C] ❌ 6AZ3_e_4
X:65 [ASN] 0:2745 [C] e:137 [GLY] 4:104 [A] ❌ 6AZ3_e_4
X:61 [ARG] 0:2745 [C] e:133 [LYS] 4:104 [A] ❌ 1YHQ_X_0
X:62 [GLY] 0:2745 [C] e:134 [GLY] 4:104 [A] ❌ 1YHQ_X_0
X:63 [ARG] 0:2745 [C] e:135 [VAL] 4:104 [A] ❌ 1YHQ_X_0
X:19 [ALA] 0:2726 [U] e:93 [LYS] 4:84 [U] ❌ 1YHQ_X_0
X:19 [ALA] 0:2727 [A] e:93 [LYS] 4:85 [C] ❌ 1YHQ_X_0
X:20 [GLU] 0:2726 [U] e:94 [LYS] 4:84 [U] ❌ 1YHQ_X_0
X:21 [PRO] 0:2726 [U] e:95 [THR] 4:84 [U] ❌ 1YHQ_X_0
X:25 [ARG] 0:2726 [U] e:99 [ARG] 4:84 [U] ❌ 1YHQ_X_0
X:25 [ARG] 0:2728 [C] e:99 [ARG] 4:87 [G] ❌ 6AZ3_4:87 no longer at interface
X:60 [ALA] 0:2742 [G] e:132 [HIS] 4:101 [G] ❌ 1YHQ_0:2742 no longer at interface
X:64 [ALA] 0:2746 [A] e:136 [LYS] 4:105 [A] ❌ 1YHQ_X:64, 1YHQ_0:2746 no longer at interface
X:64 [ALA] 0:2750 [G] e:136 [LYS] 4:108 [G] ❌ 1YHQ_X:64, 1YHQ_0:2750 no longer at interface
X:18 [ARG] 0:2756 [U] e:92 [LYS] 4:114 [A] ❌ 1YHQ_0:2756 no longer at interface
X:64 [ALA] 0:2745 [C] e:136 [LYS] 4:104 [A] ❌ 1YHQ_X:64 no longer at interface
X:64 [ALA] 0:2749 [U] e:136 [LYS] 4:107 [U] ❌ 1YHQ_X:64 no longer at interface

logo_download Export the table of contacts

Properties of this pair

Common ECOD label(s)
 Common RFAM label(s)
 Interface TM-score
 Interface RMSD
 Percentage identity
 Protein TM-score
 RNA TM-score
 Protein coverage
 RNA coverage
 Percentage conservation
 Apolar conservation
 H-bond conservation
 Percentage switching out
Ribosomal protein L31e/gp120 outer domain 0.76 2.19 0.15 0.89 0.79 0.85 0.55 0.47 0.50 0.10 0.41


Other pairs involving 1YHQ_X_0 or 6AZ3_e_4

Total number of entries: 7

Interface 1 Interface 2 Percentage conservation
 		Interface TM-score
 		Interface RMSD
 		Percentage identity
 		Common ECOD label(s)
 		Common RFAM label(s)
 		Explore both interfaces
6AZ3_e_4 7O7Y_Bd_B5 0.70 0.86 1.14 0.31 Ribosomal protein L31e/gp120 outer domain Eukaryotic large subunit ribosomal RNA compare
1VQ8_X_0 1YHQ_X_0 0.99 1.0 0.21 1.0 Ribosomal protein L31e/gp120 outer domain Archaeal large subunit ribosomal RNA compare
1VQ8_X_0 6AZ3_e_4 0.47 0.76 2.15 0.15 Ribosomal protein L31e/gp120 outer domain compare
1YHQ_X_0 6AZ3_e_1 0.80 0.75 1.26 0.05 Ribosomal protein L31e/gp120 outer domain compare
1YHQ_X_0 6AZ3_e_4 0.47 0.76 2.19 0.15 Ribosomal protein L31e/gp120 outer domain compare
1YHQ_X_0 7O7Y_Bd_B5 0.64 0.94 1.83 0.35 Ribosomal protein L31e/gp120 outer domain compare
1YHQ_X_0 6AZ3_e_2 0.34 0.79 2.69 0.12 Ribosomal protein L31e/gp120 outer domain compare