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All interfaces > All interologs > Interface groups > group108 > 1YHQ_X_0 vs 7O7Y_Bd_B5

Interface analysis


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Licorice
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RNA

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Licorice
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Interface

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Common contacts -

1YHQ_X
1YHQ_0
7O7Y_Bd
7O7Y_B5
Conserved?
X:36 [HIS] 0:2855 [G] Bd:52 [PHE] B5:4734 [U] ✔
X:50 [LEU] 0:1384 [C] Bd:64 [ILE] B5:2216 [C] ✔
X:50 [LEU] 0:1385 [G] Bd:64 [ILE] B5:2217 [A] ✔
X:40 [HIS] 0:2904 [U] Bd:56 [GLU] B5:4797 [A] ✔
X:48 [VAL] 0:1385 [G] Bd:62 [VAL] B5:2217 [A] ✔
X:30 [MET] 0:1383 [U] Bd:46 [LEU] B5:2215 [U] ✔
X:30 [MET] 0:1384 [C] Bd:46 [LEU] B5:2216 [C] ✔
X:68 [SER] 0:2894 [C] Bd:82 [TYR] B5:4784 [G] ✔
X:68 [SER] 0:2895 [C] Bd:82 [TYR] B5:4785 [U] ✔
X:11 [THR] 0:2855 [G] Bd:26 [THR] B5:4734 [U] ✔
X:11 [THR] 0:2856 [A] Bd:26 [THR] B5:4735 [C] ✔
X:11 [THR] 0:2857 [C] Bd:26 [THR] B5:4736 [G] ✔
X:69 [LYS] 0:2857 [C] Bd:83 [ARG] B5:4736 [G] ✔
X:51 [ASP] 0:1384 [C] Bd:65 [ASP] B5:2216 [C] ✔
X:60 [ALA] 0:1401 [G] Bd:74 [ALA] B5:2233 [G] ✔
X:59 [TRP] 0:1381 [A] Bd:73 [TRP] B5:2213 [A] ✔
X:59 [TRP] 0:1382 [G] Bd:73 [TRP] B5:2214 [U] ✔
X:59 [TRP] 0:1383 [U] Bd:73 [TRP] B5:2215 [U] ✔
X:59 [TRP] 0:1400 [C] Bd:73 [TRP] B5:2232 [A] ✔
X:59 [TRP] 0:1401 [G] Bd:73 [TRP] B5:2233 [G] ✔
X:56 [GLU] 0:1399 [A] Bd:70 [LYS] B5:2231 [A] ✔
X:56 [GLU] 0:1400 [C] Bd:70 [LYS] B5:2232 [A] ✔
X:34 [ARG] 0:1384 [C] Bd:50 [ARG] B5:2216 [C] ✔
X:34 [ARG] 0:1385 [G] Bd:50 [ARG] B5:2217 [A] ✔
X:18 [ARG] 0:2727 [A] Bd:34 [HIS] B5:4381 [A] ✔
X:23 [HIS] 0:1380 [U] Bd:39 [LYS] B5:2212 [U] ✔
X:22 [ASN] 0:2043 [U] Bd:38 [PHE] B5:3581 [A] ✔
X:22 [ASN] 0:2726 [U] Bd:38 [PHE] B5:4380 [U] ✔
X:22 [ASN] 0:2749 [U] Bd:38 [PHE] B5:4403 [U] ✔
X:21 [PRO] 0:2043 [U] Bd:37 [GLY] B5:3581 [A] ✔
X:8 [ARG] 0:2904 [U] Bd:23 [ARG] B5:4797 [A] ✔
X:62 [GLY] 0:1401 [G] Bd:76 [GLY] B5:2233 [G] ✔
X:62 [GLY] 0:1402 [G] Bd:76 [GLY] B5:2234 [G] ✔
X:62 [GLY] 0:2744 [G] Bd:76 [GLY] B5:4399 [C] ✔
X:25 [ARG] 0:2728 [C] Bd:41 [ARG] B5:4383 [OMG] ✔
X:28 [LYS] 0:1729 [A] Bd:44 [ARG] B5:2676 [A] ✔
X:65 [ASN] 0:2744 [G] Bd:79 [ASN] B5:4399 [C] ✔
X:65 [ASN] 0:2745 [C] Bd:79 [ASN] B5:4400 [C] ✔
X:52 [PRO] 0:1384 [C] Bd:66 [THR] B5:2216 [C] ✔
X:52 [PRO] 0:1385 [G] Bd:66 [THR] B5:2217 [A] ✔
X:52 [PRO] 0:1398 [G] Bd:66 [THR] B5:2230 [G] ✔
X:27 [ASP] 0:1382 [G] Bd:43 [PRO] B5:2214 [U] ✔
X:27 [ASP] 0:1383 [U] Bd:43 [PRO] B5:2215 [U] ✔
X:15 [ARG] 0:2855 [G] Bd:31 [LYS] B5:4734 [U] ✔
X:15 [ARG] 0:2856 [A] Bd:31 [LYS] B5:4735 [C] ✔
X:49 [ARG] 0:1385 [G] Bd:63 [ARG] B5:2217 [A] ✔
X:49 [ARG] 0:1386 [G] Bd:63 [ARG] B5:2218 [A] ✔
X:61 [ARG] 0:2743 [A] Bd:75 [LYS] B5:4398 [G] ✔
X:61 [ARG] 0:2744 [G] Bd:75 [LYS] B5:4399 [C] ✔
X:31 [ILE] 0:1728 [G] Bd:47 [LYS] B5:2675 [A] ✔
X:63 [ARG] 0:1381 [A] Bd:77 [ILE] B5:2213 [A] ✔
X:63 [ARG] 0:1382 [G] Bd:77 [ILE] B5:2214 [U] ✔
X:63 [ARG] 0:1401 [G] Bd:77 [ILE] B5:2233 [G] ✔
X:55 [ASN] 0:1383 [U] Bd:69 [ASN] B5:2215 [U] ✔
X:55 [ASN] 0:1384 [C] Bd:69 [ASN] B5:2216 [C] ✔
X:55 [ASN] 0:1399 [A] Bd:69 [ASN] B5:2231 [A] ✔
X:55 [ASN] 0:1400 [C] Bd:69 [ASN] B5:2232 [A] ✔
X:13 [PRO] 0:2856 [A] Bd:28 [ASN] B5:4735 [C] ✔
X:20 [GLU] 0:2043 [U] Bd:36 [VAL] B5:3581 [A] ❌ 7O7Y_Bd_B5
X:60 [ALA] 0:2743 [A] Bd:74 [ALA] B5:4398 [G] ❌ 7O7Y_Bd_B5
X:18 [ARG] 0:2895 [C] Bd:34 [HIS] B5:4785 [U] ❌ 7O7Y_Bd_B5
X:23 [HIS] 0:2043 [U] Bd:39 [LYS] B5:3581 [A] ❌ 7O7Y_Bd_B5
X:22 [ASN] 0:2727 [A] Bd:38 [PHE] B5:4381 [A] ❌ 7O7Y_Bd_B5
X:39 [LYS] 0:2834 [G] Bd:55 [LYS] B5:4712 [U] ❌ 7O7Y_Bd_B5
X:25 [ARG] 0:2727 [A] Bd:41 [ARG] B5:4381 [A] ❌ 7O7Y_Bd_B5
X:28 [LYS] 0:1728 [G] Bd:44 [ARG] B5:2675 [A] ❌ 7O7Y_Bd_B5
X:63 [ARG] 0:1380 [U] Bd:77 [ILE] B5:2212 [U] ❌ 7O7Y_Bd_B5
X:13 [PRO] 0:2855 [G] Bd:28 [ASN] B5:4734 [U] ❌ 7O7Y_Bd_B5
X:13 [PRO] 0:2895 [C] Bd:28 [ASN] B5:4785 [U] ❌ 1YHQ_X_0
X:16 [ASP] 0:2855 [G] Bd:32 [ARG] B5:4734 [U] ❌ 1YHQ_X_0
X:16 [ASP] 0:2856 [A] Bd:32 [ARG] B5:4735 [C] ❌ 1YHQ_X_0
X:19 [ALA] 0:2727 [A] Bd:35 [GLY] B5:4381 [A] ❌ 1YHQ_X_0
X:20 [GLU] 0:2726 [U] Bd:36 [VAL] B5:4380 [U] ❌ 1YHQ_X_0
X:23 [HIS] 0:1381 [A] Bd:39 [LYS] B5:2213 [A] ❌ 1YHQ_X_0
X:40 [HIS] 0:2855 [G] Bd:56 [GLU] B5:4734 [U] ❌ 1YHQ_X_0
X:61 [ARG] 0:2745 [C] Bd:75 [LYS] B5:4400 [C] ❌ 1YHQ_X_0
X:62 [GLY] 0:2745 [C] Bd:76 [GLY] B5:4400 [C] ❌ 1YHQ_X_0
X:63 [ARG] 0:2745 [C] Bd:77 [ILE] B5:4400 [C] ❌ 1YHQ_X_0
X:68 [SER] 0:2728 [C] Bd:82 [TYR] B5:4383 [OMG] ❌ 1YHQ_X_0
X:69 [LYS] 0:2894 [C] Bd:83 [ARG] B5:4784 [G] ❌ 1YHQ_X_0
X:69 [LYS] 0:2856 [A] Bd:83 [ARG] B5:4735 [C] ❌ 1YHQ_X_0
X:69 [LYS] 0:2895 [C] Bd:83 [ARG] B5:4785 [U] ❌ 1YHQ_X_0
X:40 [HIS] 0:2905 [A] Bd:56 [GLU] B5:4798 [C] ❌ 7O7Y_B5:4798 no longer at interface
X:24 [LYS] 0:2044 [G] Bd:40 [LYS] B5:3582 [C] ❌ 7O7Y_B5:3582 no longer at interface
X:19 [ALA] 0:1731 [C] Bd:35 [GLY] B5:2677 [C] ❌ 7O7Y_B5:2677 no longer at interface
X:20 [GLU] 0:1731 [C] Bd:36 [VAL] B5:2677 [C] ❌ 7O7Y_B5:2677 no longer at interface
X:18 [ARG] 0:2896 [A] Bd:34 [HIS] B5:4788 [G] ❌ 7O7Y_B5:4788 no longer at interface
X:23 [HIS] 0:2044 [G] Bd:39 [LYS] B5:3582 [C] ❌ 7O7Y_B5:3582 no longer at interface
X:22 [ASN] 0:2042 [U] Bd:38 [PHE] B5:3580 [U] ❌ 7O7Y_B5:3580 no longer at interface
X:21 [PRO] 0:1731 [C] Bd:37 [GLY] B5:2677 [C] ❌ 7O7Y_B5:2677 no longer at interface
X:21 [PRO] 0:2044 [G] Bd:37 [GLY] B5:3582 [C] ❌ 7O7Y_B5:3582 no longer at interface
X:8 [ARG] 0:2905 [A] Bd:23 [ARG] B5:4798 [C] ❌ 7O7Y_B5:4798 no longer at interface
X:39 [LYS] 0:2835 [C] Bd:55 [LYS] B5:4713 [C] ❌ 7O7Y_B5:4713 no longer at interface
X:39 [LYS] 0:2905 [A] Bd:55 [LYS] B5:4798 [C] ❌ 7O7Y_B5:4798 no longer at interface
X:15 [ARG] 0:2896 [A] Bd:31 [LYS] B5:4788 [G] ❌ 7O7Y_B5:4788 no longer at interface
X:42 [SER] 0:2905 [A] Bd:58 [GLY] B5:4798 [C] ❌ 7O7Y_Bd:58, 7O7Y_B5:4798 no longer at interface
X:8 [ARG] 0:2903 [C] Bd:23 [ARG] B5:4796 [C] ❌ 1YHQ_0:2903 no longer at interface
X:10 [VAL] 0:2903 [C] Bd:25 [TYR] B5:4796 [C] ❌ 1YHQ_X:10, 1YHQ_0:2903 no longer at interface
X:23 [HIS] 0:2746 [A] Bd:39 [LYS] B5:4401 [A] ❌ 1YHQ_0:2746 no longer at interface
X:24 [LYS] 0:1727 [G] Bd:40 [LYS] B5:2674 [G] ❌ 1YHQ_0:1727 no longer at interface
X:31 [ILE] 0:1727 [G] Bd:47 [LYS] B5:2674 [G] ❌ 1YHQ_0:1727 no longer at interface
X:39 [LYS] 0:2854 [A] Bd:55 [LYS] B5:4733 [G] ❌ 1YHQ_0:2854 no longer at interface
X:40 [HIS] 0:2854 [A] Bd:56 [GLU] B5:4733 [G] ❌ 1YHQ_0:2854 no longer at interface
X:64 [ALA] 0:2746 [A] Bd:78 [ARG] B5:4401 [A] ❌ 1YHQ_X:64, 1YHQ_0:2746 no longer at interface
X:64 [ALA] 0:2750 [G] Bd:78 [ARG] B5:4404 [G] ❌ 1YHQ_X:64, 1YHQ_0:2750 no longer at interface
X:68 [SER] 0:2729 [C] Bd:82 [TYR] B5:4384 [U] ❌ 1YHQ_0:2729 no longer at interface
X:10 [VAL] 0:2904 [U] Bd:25 [TYR] B5:4797 [A] ❌ 1YHQ_X:10 no longer at interface
X:12 [ILE] 0:2856 [A] Bd:27 [ILE] B5:4735 [C] ❌ 1YHQ_X:12 no longer at interface
X:35 [GLU] 0:2834 [G] Bd:51 [LYS] B5:4712 [U] ❌ 1YHQ_X:35 no longer at interface
X:64 [ALA] 0:2745 [C] Bd:78 [ARG] B5:4400 [C] ❌ 1YHQ_X:64 no longer at interface
X:64 [ALA] 0:2749 [U] Bd:78 [ARG] B5:4403 [U] ❌ 1YHQ_X:64 no longer at interface

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Properties of this pair

Common ECOD label(s)
 Common RFAM label(s)
 Interface TM-score
 Interface RMSD
 Percentage identity
 Protein TM-score
 RNA TM-score
 Protein coverage
 RNA coverage
 Percentage conservation
 Apolar conservation
 H-bond conservation
 Percentage switching out
Ribosomal protein L31e/gp120 outer domain 0.94 1.83 0.35 0.9 0.94 0.97 0.78 0.64 0.65 0.26 0.55


Other pairs involving 1YHQ_X_0 or 7O7Y_Bd_B5

Total number of entries: 10

Interface 1 Interface 2 Percentage conservation
 		Interface TM-score
 		Interface RMSD
 		Percentage identity
 		Common ECOD label(s)
 		Common RFAM label(s)
 		Explore both interfaces
6AZ3_e_1 7O7Y_Bd_B5 0.90 0.91 0.96 0.22 Ribosomal protein L31e/gp120 outer domain Eukaryotic large subunit ribosomal RNA compare
6AZ3_e_4 7O7Y_Bd_B5 0.70 0.86 1.14 0.31 Ribosomal protein L31e/gp120 outer domain Eukaryotic large subunit ribosomal RNA compare
1VQ8_X_0 1YHQ_X_0 0.99 1.0 0.21 1.0 Ribosomal protein L31e/gp120 outer domain Archaeal large subunit ribosomal RNA compare
1VQ8_X_0 7O7Y_Bd_B5 0.66 0.94 1.78 0.35 Ribosomal protein L31e/gp120 outer domain compare
1YHQ_X_0 6AZ3_e_1 0.80 0.75 1.26 0.05 Ribosomal protein L31e/gp120 outer domain compare
1YHQ_X_0 6AZ3_e_4 0.47 0.76 2.19 0.15 Ribosomal protein L31e/gp120 outer domain compare
1YHQ_X_0 7O7Y_Bd_B5 0.64 0.94 1.83 0.35 Ribosomal protein L31e/gp120 outer domain compare
1YHQ_X_0 6AZ3_e_2 0.34 0.79 2.69 0.12 Ribosomal protein L31e/gp120 outer domain compare
6AZ3_e_5 7O7Y_Bd_B5 0.79 0.88 0.83 0.12 Ribosomal protein L31e/gp120 outer domain compare
6AZ3_e_2 7O7Y_Bd_B5 0.31 0.9 1.17 0.25 Ribosomal protein L31e/gp120 outer domain Eukaryotic large subunit ribosomal RNA compare