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All interfaces > All interologs > Interface groups > group108 > 6AZ3_e_1

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Licorice
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RNA

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Licorice
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Chain
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Hydrophobicity
Electrostatics (surface only)
Conservation*

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Rim - Core

Contacts -

6AZ3_e
6AZ3_1
Distance
Base Pair
Hbond nuc:res
Base Stacking
Residue conservation
e:74 [ARG] 1:1567 [A] 3.17 base/AA stacks 47.0
e:75 [LYS] 1:1567 [A] 4.8 1.6
e:77 [ASP] 1:1567 [A] 3.94 3.5
e:97 [SER] 1:1548 [A] 3.44 55.3
e:101 [PRO] 1:1549 [U] 3.26 1:1582 [A] 61.9
e:101 [PRO] 1:1550 [C] 4.3 1:1581 [G] 61.9
e:104 [ILE] 1:1550 [C] 3.54 1:1581 [G] 79.9
e:104 [ILE] 1:1551 [U] 3.32 1:1580 [G] 79.9
e:108 [LYS] 1:1551 [U] 2.84 1:1580 [G] 67.4
e:108 [LYS] 1:1552 [A] 4.47 1:1579 [U] 67.4
e:115 [MET] 1:1568 [A] 4.22 81.0
e:116 [LYS] 1:1568 [A] 2.99 sugar:BB 79.0
e:116 [LYS] 1:1569 [C] 2.96 79.0
e:117 [THR] 1:1568 [A] 4.7 72.9
e:117 [THR] 1:1569 [C] 3.93 72.9
e:118 [LYS] 1:1569 [C] 3.26 30.2
e:118 [LYS] 1:1570 [A] 3.65 30.2
e:119 [ASP] 1:1560 [U] 4.81 45.5
e:120 [ASN] 1:1552 [A] 3.67 1:1579 [U] 84.4
e:121 [ARG] 1:1551 [U] 4.88 1:1580 [G] 65.1
e:121 [ARG] 1:1552 [A] 3.35 1:1579 [U] 65.1
e:121 [ARG] 1:1553 [A] 3.0 1:1578 [U] 65.1
e:121 [ARG] 1:1560 [U] 4.7 65.1
e:122 [ILE] 1:1551 [U] 3.45 1:1580 [G] 87.5
e:122 [ILE] 1:1552 [A] 3.19 1:1579 [U] 87.5
e:123 [ASP] 1:1551 [U] 4.21 1:1580 [G] 91.4
e:123 [ASP] 1:1552 [A] 3.87 1:1579 [U] 91.4
e:124 [ALA] 1:1551 [U] 4.02 1:1580 [G] 33.0
e:127 [ASN] 1:1550 [C] 2.78 1:1581 [G] base:SC, sugar:SC 99.0
e:127 [ASN] 1:1551 [U] 2.99 1:1580 [G] 99.0
e:127 [ASN] 1:1581 [G] 3.04 1:1550 [C] base:SC 99.0
e:127 [ASN] 1:1582 [A] 4.41 1:1549 [U] 99.0
e:128 [THR] 1:1581 [G] 4.62 1:1550 [C] 55.0
e:128 [THR] 1:1582 [A] 3.91 1:1549 [U] 55.0
e:131 [TRP] 1:1548 [A] 3.7 87.4
e:131 [TRP] 1:1549 [U] 3.6 1:1582 [A] 87.4
e:131 [TRP] 1:1550 [C] 3.0 1:1581 [G] sugar:SC 87.4
e:131 [TRP] 1:1582 [A] 3.76 1:1549 [U] 87.4
e:131 [TRP] 1:1583 [U] 3.23 2:60 [A] 87.4
e:132 [HIS] 1:1583 [U] 4.51 2:60 [A] 56.6
e:133 [LYS] 1:1584 [A] 4.7 2:59 [U] 65.9
e:134 [GLY] 1:1583 [U] 3.5 2:60 [A] 94.3
e:134 [GLY] 1:1584 [A] 3.87 2:59 [U] 94.3
e:135 [VAL] 1:1548 [A] 3.38 63.3
e:135 [VAL] 1:1583 [U] 4.48 2:60 [A] 63.3
e:136 [LYS] 1:1547 [G] 4.62 63.2
e:148 [ARG] 1:1567 [A] 4.97 79.0
e:148 [ARG] 1:1568 [A] 3.97 79.0
e:151 [GLU] 1:1560 [U] 3.26 base:BB 54.1
e:152 [THR] 1:1560 [U] 3.36 44.1
e:153 [THR] 1:1560 [U] 2.94 base:BB 43.0
e:155 [GLY] 1:1562 [U] 3.88 49.6
e:156 [ASN] 1:1559 [A] 4.69 54.3
e:156 [ASN] 1:1560 [U] 3.28 base:SC, sugar:SC 54.3
e:156 [ASN] 1:1561 [A] 3.26 54.3
e:156 [ASN] 1:1562 [U] 4.36 54.3
e:157 [LYS] 1:1562 [U] 3.48 52.2
e:158 [HIS] 1:1562 [U] 3.31 sugar:SC base/AA stacks 42.1
e:158 [HIS] 1:1566 [C] 4.4 42.1
e:158 [HIS] 1:1567 [A] 4.91 42.1
e:158 [HIS] 1:1568 [A] 2.67 42.1
e:159 [LYS] 1:1567 [A] 4.32 54.1
e:159 [LYS] 1:1568 [A] 3.47 54.1
e:160 [HIS] 1:1560 [U] 3.24 base/AA stacks 70.5
e:161 [PHE] 1:1567 [A] 4.47 37.2
e:161 [PHE] 1:1568 [A] 3.61 37.2

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*Conservation was calculated using Rate4Site
NB: conservation is missing (completly white) for a very small minority of cases in which no homologous sequences were found (e.g. synthetic proteins 7D3J_A & 7EU9_A)

Properties of this interface

Interolog group ID Structure ID Structure description
 UniProt ID
 		ECOD label(s)
 		RFAM label(s)
 		Is ribosome? RCSB PDB link
group108 6AZ3_e_1 e: 60s ribosomal subunit protein l31, putative, Leishmania donovani (natural) 1: rRNA alpha, Leishmania donovani (natural) A0A3Q8IJL7 Ribosomal protein L31e/gp120 outer domain Eukaryotic large subunit ribosomal RNA ✔

Interologs

Total number of interologs for this interface: 3

Interface 1 Interface 2 Percentage conservation
 		Interface TM-score
 		Interface RMSD
 		Percentage identity
 		Common ECOD label(s)
 		Common RFAM label(s)
 		Explore both interfaces
6AZ3_e_1 7O7Y_Bd_B5 0.90 0.91 0.96 0.22 Ribosomal protein L31e/gp120 outer domain Eukaryotic large subunit ribosomal RNA compare
1VQ8_X_0 6AZ3_e_1 0.79 0.75 1.28 0.05 Ribosomal protein L31e/gp120 outer domain compare
1YHQ_X_0 6AZ3_e_1 0.80 0.75 1.26 0.05 Ribosomal protein L31e/gp120 outer domain compare