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All interfaces > All interologs > Interface groups > group108 > 6AZ3_e_2

Interface analysis

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Protein

Cartoon
Licorice
Surface

RNA

Cartoon
Licorice
Surface

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Chain
Chain (with hetatm)
Chainbow
Hydrophobicity
Electrostatics (surface only)
Conservation*

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Rim - Core

Contacts -

6AZ3_e
6AZ3_2
Distance
Base Pair
Hbond nuc:res
Base Stacking
Residue conservation
e:93 [LYS] 2:589 [U] 3.14 2:76 [A] 27.5
e:93 [LYS] 2:590 [U] 3.31 2:74 [A] 27.5
e:93 [LYS] 2:591 [A2M] 4.38 2:73 [OMU] 27.5
e:94 [LYS] 2:67 [G] 4.05 2:594 [A] 43.7
e:94 [LYS] 2:68 [A] 3.01 43.7
e:94 [LYS] 2:591 [A2M] 4.62 2:73 [OMU] 43.7
e:95 [THR] 2:591 [A2M] 3.21 2:73 [OMU] 42.7
e:95 [THR] 2:592 [C] 4.11 2:72 [G] 42.7
e:98 [LYS] 2:67 [G] 3.47 2:594 [A] base:SC 66.6
e:98 [LYS] 2:592 [C] 4.59 2:72 [G] 66.6
e:102 [LEU] 2:66 [A] 3.57 2:595 [U] 54.0
e:102 [LEU] 2:67 [G] 4.72 2:594 [A] 54.0
e:105 [LYS] 2:65 [G] 2.71 2:596 [C] 60.4
e:105 [LYS] 2:66 [A] 3.03 2:595 [U] 60.4
e:106 [ARG] 2:67 [G] 2.85 2:594 [A] 3.9

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*Conservation was calculated using Rate4Site
NB: conservation is missing (completly white) for a very small minority of cases in which no homologous sequences were found (e.g. synthetic proteins 7D3J_A & 7EU9_A)

Properties of this interface

Interolog group ID Structure ID Structure description
 UniProt ID
 		ECOD label(s)
 		RFAM label(s)
 		Is ribosome? RCSB PDB link
group108 6AZ3_e_2 e: 60s ribosomal subunit protein l31, putative, Leishmania donovani (natural) 2: rRNA beta, Leishmania donovani (natural) A0A3Q8IJL7 Ribosomal protein L31e/gp120 outer domain Eukaryotic large subunit ribosomal RNA ✔

Interologs

Total number of interologs for this interface: 3

Interface 1 Interface 2 Percentage conservation
 		Interface TM-score
 		Interface RMSD
 		Percentage identity
 		Common ECOD label(s)
 		Common RFAM label(s)
 		Explore both interfaces
1VQ8_X_0 6AZ3_e_2 0.33 0.79 2.67 0.12 Ribosomal protein L31e/gp120 outer domain compare
1YHQ_X_0 6AZ3_e_2 0.34 0.79 2.69 0.12 Ribosomal protein L31e/gp120 outer domain compare
6AZ3_e_2 7O7Y_Bd_B5 0.31 0.9 1.17 0.25 Ribosomal protein L31e/gp120 outer domain Eukaryotic large subunit ribosomal RNA compare