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All interfaces > All interologs > Interface groups > group108 > 6AZ3_e_4

Interface analysis

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Protein

Cartoon
Licorice
Surface

RNA

Cartoon
Licorice
Surface

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Chain
Chain (with hetatm)
Chainbow
Hydrophobicity
Electrostatics (surface only)
Conservation*

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Rim - Core

Contacts -

6AZ3_e
6AZ3_4
Distance
Base Pair
Hbond nuc:res
Base Stacking
Residue conservation
e:91 [LEU] 4:86 [U] 3.85 9.0
e:92 [LYS] 4:85 [C] 3.22 4:113 [G] sugar:SC 35.8
e:92 [LYS] 4:86 [U] 3.54 35.8
e:92 [LYS] 4:114 [A] 3.67 4:83 [U] base:SC 35.8
e:93 [LYS] 4:84 [U] 2.86 sugar:SC 27.5
e:93 [LYS] 4:85 [C] 3.37 4:113 [G] 27.5
e:93 [LYS] 4:86 [U] 2.67 27.5
e:94 [LYS] 4:84 [U] 2.84 base:BB 43.7
e:94 [LYS] 4:86 [U] 4.96 43.7
e:95 [THR] 4:84 [U] 3.67 42.7
e:96 [PHE] 4:84 [U] 3.4 base:BB base/AA stacks 54.6
e:96 [PHE] 4:86 [U] 3.67 base/AA stacks 54.6
e:96 [PHE] 4:107 [U] 3.17 54.6
e:99 [ARG] 4:84 [U] 3.27 base:SC 88.5
e:99 [ARG] 4:85 [C] 4.77 4:113 [G] 88.5
e:99 [ARG] 4:86 [U] 2.48 88.5
e:132 [HIS] 4:101 [G] 4.94 4:96 [C] 56.6
e:132 [HIS] 4:102 [G] 4.92 4:95 [U] 56.6
e:133 [LYS] 4:102 [G] 3.26 4:95 [U] 65.9
e:133 [LYS] 4:103 [C] 3.28 4:94 [G] 65.9
e:133 [LYS] 4:104 [A] 4.74 4:93 [U] 65.9
e:134 [GLY] 4:103 [C] 4.7 4:94 [G] 94.3
e:134 [GLY] 4:104 [A] 4.91 4:93 [U] 94.3
e:135 [VAL] 4:104 [A] 4.97 4:93 [U] 63.3
e:136 [LYS] 4:86 [U] 3.23 63.2
e:136 [LYS] 4:104 [A] 2.78 4:93 [U] 63.2
e:136 [LYS] 4:105 [A] 3.35 4:92 [U] 63.2
e:136 [LYS] 4:107 [U] 4.19 63.2
e:136 [LYS] 4:108 [G] 4.72 4:91 [U] 63.2
e:137 [GLY] 4:103 [C] 4.27 4:94 [G] 64.2

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*Conservation was calculated using Rate4Site
NB: conservation is missing (completly white) for a very small minority of cases in which no homologous sequences were found (e.g. synthetic proteins 7D3J_A & 7EU9_A)

Properties of this interface

Interolog group ID Structure ID Structure description
 UniProt ID
 		ECOD label(s)
 		RFAM label(s)
 		Is ribosome? RCSB PDB link
group108 6AZ3_e_4 e: 60s ribosomal subunit protein l31, putative, Leishmania donovani (natural) 4: rRNA delta, Leishmania donovani (natural) A0A3Q8IJL7 Ribosomal protein L31e/gp120 outer domain Eukaryotic large subunit ribosomal RNA ✔

Interologs

Total number of interologs for this interface: 3

Interface 1 Interface 2 Percentage conservation
 		Interface TM-score
 		Interface RMSD
 		Percentage identity
 		Common ECOD label(s)
 		Common RFAM label(s)
 		Explore both interfaces
6AZ3_e_4 7O7Y_Bd_B5 0.70 0.86 1.14 0.31 Ribosomal protein L31e/gp120 outer domain Eukaryotic large subunit ribosomal RNA compare
1VQ8_X_0 6AZ3_e_4 0.47 0.76 2.15 0.15 Ribosomal protein L31e/gp120 outer domain compare
1YHQ_X_0 6AZ3_e_4 0.47 0.76 2.19 0.15 Ribosomal protein L31e/gp120 outer domain compare