RNAprotDB

Contacts -

6AZ3_e	6AZ3_5	Distance	Base Pair	Hbond nuc:res	Base Stacking	Residue conservation
e:64 [THR]	5:26 [A]	3.14	5:123 [U]			65.13
e:64 [THR]	5:27 [U]	3.28				65.13
e:65 [ARG]	5:27 [U]	3.04			base/AA stacks	65.13
e:65 [ARG]	5:28 [G]	2.89	5:122 [C]	base:SC		65.13
e:65 [ARG]	5:29 [C]	4.01	5:121 [G]			65.13
e:65 [ARG]	5:120 [U]	3.08	5:30 [A]			65.13
e:65 [ARG]	5:121 [G]	3.54	5:29 [C]	base:SC		65.13
e:65 [ARG]	5:122 [C]	4.09	5:28 [G]			65.13
e:66 [ALA]	5:25 [C]	4.09				65.13
e:66 [ALA]	5:26 [A]	3.77	5:123 [U]			65.13
e:66 [ALA]	5:27 [U]	3.81				65.13
e:66 [ALA]	5:123 [U]	4.53	5:26 [A]			65.13
e:67 [SER]	5:26 [A]	3.97	5:123 [U]			64.48
e:69 [ARG]	5:25 [C]	3.47		base:SC		52.99
e:69 [ARG]	5:26 [A]	4.95	5:123 [U]			52.99
e:69 [ARG]	5:122 [C]	4.2	5:28 [G]			52.99
e:69 [ARG]	5:123 [U]	3.22	5:26 [A]		base/AA stacks	52.99
e:69 [ARG]	5:124 [C]	4.89				52.99
e:71 [ARG]	5:25 [C]	3.89				21.75
e:71 [ARG]	5:123 [U]	4.14	5:26 [A]			21.75
e:71 [ARG]	5:124 [C]	2.74		base:SC, base:SC, sugar:SC		21.75
e:72 [THR]	5:124 [C]	2.94				48.4
e:73 [GLY]	5:124 [C]	3.22				10.58
e:74 [ARG]	5:124 [C]	3.93				47.02
e:74 [ARG]	5:125 [A]	4.71				47.02
e:75 [LYS]	5:122 [C]	3.68	5:28 [G]			1.65
e:75 [LYS]	5:123 [U]	2.37	5:26 [A]			1.65
e:75 [LYS]	5:124 [C]	4.84				1.65
e:81 [MET]	5:122 [C]	4.31	5:28 [G]			59.38
e:84 [THR]	5:30 [A]	4.43	5:120 [U]			88.71
e:84 [THR]	5:31 [U]	3.22	5:119 [A]			88.71
e:84 [THR]	5:32 [G]	4.23	5:118 [C]			88.71
e:85 [ILE]	5:31 [U]	3.9	5:119 [A]			85.42
e:86 [HIS]	5:31 [U]	2.97	5:119 [A]			74.15
e:86 [HIS]	5:32 [G]	4.82	5:118 [C]			74.15
e:86 [HIS]	5:102 [U]	2.63	5:36 [U]			74.15
e:86 [HIS]	5:103 [U]	3.98				74.15
e:86 [HIS]	5:104 [G]	4.79				74.15
e:88 [SER]	5:102 [U]	4.36	5:36 [U]			67.31
e:88 [SER]	5:104 [G]	3.92				67.31
e:89 [LYS]	5:30 [A]	3.61	5:120 [U]			62.4
e:89 [LYS]	5:31 [U]	2.65	5:119 [A]			62.4
e:89 [LYS]	5:103 [U]	4.94				62.4
e:89 [LYS]	5:104 [G]	3.08				62.4
e:89 [LYS]	5:105 [A]	3.76				62.4
e:92 [LYS]	5:104 [G]	3.03				35.8
e:92 [LYS]	5:106 [G]	3.54	5:15 [A]			35.8
e:110 [PHE]	5:30 [A]	3.63	5:120 [U]			52.16
e:110 [PHE]	5:31 [U]	4.62	5:119 [A]			52.16
e:113 [ARG]	5:10 [C]	3.71	5:22 [G]			81.17
e:114 [LEU]	5:122 [C]	4.03	5:28 [G]			68.15
e:116 [LYS]	5:123 [U]	4.39	5:26 [A]			79.08
e:116 [LYS]	5:124 [C]	3.94				79.08
e:141 [ARG]	5:31 [U]	4.53	5:119 [A]			81.4
e:141 [ARG]	5:32 [G]	2.75	5:118 [C]			81.4
e:141 [ARG]	5:101 [C]	4.13	5:37 [G]			81.4
e:141 [ARG]	5:102 [U]	3.43	5:36 [U]			81.4
e:141 [ARG]	5:103 [U]	4.78				81.4
e:143 [ARG]	5:31 [U]	4.92	5:119 [A]			87.19
e:173 [PHE]	5:32 [G]	3.59	5:118 [C]			85.98
e:174 [LYS]	5:32 [G]	3.9	5:118 [C]			79.95
e:174 [LYS]	5:33 [G]	3.3	5:109 [C]			79.95
e:174 [LYS]	5:100 [C]	4.02	5:38 [G]			79.95
e:174 [LYS]	5:101 [C]	3.11	5:37 [G]			79.95
e:175 [GLY]	5:32 [G]	2.89	5:118 [C]			71.19
e:175 [GLY]	5:33 [G]	3.59	5:109 [C]			71.19
e:176 [LEU]	5:31 [U]	2.74	5:119 [A]	sugar:BB		86.18
e:176 [LEU]	5:32 [G]	3.41	5:118 [C]			86.18
e:177 [THR]	5:31 [U]	3.34	5:119 [A]			42.77
e:177 [THR]	5:32 [G]	4.11	5:118 [C]			42.77
e:177 [THR]	5:119 [A]	4.91	5:31 [U]			42.77
e:177 [THR]	5:120 [U]	4.25	5:30 [A]			42.77
e:178 [THR]	5:30 [A]	4.94	5:120 [U]			82.49
e:178 [THR]	5:31 [U]	4.71	5:119 [A]			82.49
e:178 [THR]	5:121 [G]	3.33	5:29 [C]			82.49
e:180 [THR]	5:122 [C]	4.57	5:28 [G]			41.07

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*Conservation was calculated using Rate4Site
NB: conservation is missing (completly white) for a very small minority of cases in which no homologous sequences were found (e.g. synthetic proteins 7D3J_A & 7EU9_A)

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