RNAprotDB

All interfaces > All interologs > Interface groups > group108 > 7O7Y_Bd_B5

Interface analysis

mouse controls

Style

Protein

Cartoon
Licorice
Surface

RNA

Cartoon
Licorice
Surface

Color

Chain
Chain (with hetatm)
Chainbow
Hydrophobicity
Electrostatics (surface only)
Conservation*

View

Focus on

Interface
RNA
Protein
All

Show chains

Interface

show as licorice
show Accessibility
Rim - Core

Contacts -

7O7Y_Bd
7O7Y_B5
Distance
Base Pair
Hbond nuc:res
Base Stacking
Residue conservation
Bd:23 [ARG] B5:4796 [C] 3.85 B5:4733 [G] 61.37
Bd:23 [ARG] B5:4797 [A] 3.59 B5:4732 [G] 61.37
Bd:25 [TYR] B5:4796 [C] 4.08 B5:4733 [G] 36.46
Bd:25 [TYR] B5:4797 [A] 4.91 B5:4732 [G] 36.46
Bd:26 [THR] B5:4734 [U] 4.59 B5:4795 [A] 95.17
Bd:26 [THR] B5:4735 [C] 3.06 B5:4794 [G] 95.17
Bd:26 [THR] B5:4736 [G] 3.64 B5:4792 [U] 95.17
Bd:27 [ILE] B5:4735 [C] 4.79 B5:4794 [G] 83.63
Bd:28 [ASN] B5:4735 [C] 3.15 B5:4794 [G] 65.12
Bd:28 [ASN] B5:4785 [U] 4.07 B5:4740 [PSU] 65.12
Bd:28 [ASN] B5:4786 [C] 4.52 65.12
Bd:30 [HIS] B5:4381 [A] 3.79 B5:4409 [G] 59.67
Bd:30 [HIS] B5:4383 [OMG] 2.58 B5:4408 [C] 59.67
Bd:30 [HIS] B5:4784 [G] 3.21 B5:4741 [U] 59.67
Bd:30 [HIS] B5:4785 [U] 2.84 B5:4740 [PSU] 59.67
Bd:30 [HIS] B5:4787 [A] 4.19 59.67
Bd:31 [LYS] B5:4734 [U] 3.32 B5:4795 [A] 72.93
Bd:31 [LYS] B5:4735 [C] 2.73 B5:4794 [G] 72.93
Bd:31 [LYS] B5:4786 [C] 4.49 72.93
Bd:31 [LYS] B5:4787 [A] 3.14 sugar:BB 72.93
Bd:32 [ARG] B5:4734 [U] 3.43 B5:4795 [A] 10.53
Bd:32 [ARG] B5:4735 [C] 2.41 B5:4794 [G] 10.53
Bd:33 [ILE] B5:4382 [PSU] 4.16 7.89
Bd:34 [HIS] B5:4381 [A] 3.44 B5:4409 [G] 37.76
Bd:34 [HIS] B5:4382 [PSU] 3.83 37.76
Bd:34 [HIS] B5:4787 [A] 3.32 base/AA stacks 37.76
Bd:35 [GLY] B5:4381 [A] 4.64 B5:4409 [G] 23.7
Bd:35 [GLY] B5:4382 [PSU] 3.1 23.7
Bd:36 [VAL] B5:4380 [U] 4.83 30.42
Bd:36 [VAL] B5:4382 [PSU] 4.72 30.42
Bd:37 [GLY] B5:3581 [A] 3.63 B5:2682 [U] 42.94
Bd:38 [PHE] B5:3581 [A] 4.95 B5:2682 [U] 43.04
Bd:38 [PHE] B5:4380 [U] 3.26 base/AA stacks 43.04
Bd:38 [PHE] B5:4382 [PSU] 3.56 base/AA stacks 43.04
Bd:38 [PHE] B5:4403 [U] 3.63 43.04
Bd:39 [LYS] B5:2212 [U] 2.65 base:SC 34.2
Bd:39 [LYS] B5:2213 [A] 2.95 base:SC 34.2
Bd:39 [LYS] B5:4401 [A] 4.78 B5:4388 [U] 34.2
Bd:40 [LYS] B5:2674 [G] 4.82 B5:3586 [C] 57.15
Bd:41 [ARG] B5:4382 [PSU] 2.85 77.92
Bd:41 [ARG] B5:4383 [OMG] 4.62 B5:4408 [C] 77.92
Bd:43 [PRO] B5:2214 [U] 3.25 B5:2232 [A] 51.1
Bd:43 [PRO] B5:2215 [U] 4.13 B5:2231 [A] 51.1
Bd:44 [ARG] B5:2676 [A] 3.13 B5:3584 [A] 44.75
Bd:46 [LEU] B5:2215 [U] 3.28 B5:2231 [A] 64.06
Bd:46 [LEU] B5:2216 [C] 3.62 B5:2230 [G] 64.06
Bd:47 [LYS] B5:2674 [G] 3.42 B5:3586 [C] 55.78
Bd:47 [LYS] B5:2675 [A] 2.72 B5:3585 [PSU] 55.78
Bd:50 [ARG] B5:2216 [C] 3.55 B5:2230 [G] 59.65
Bd:50 [ARG] B5:2217 [A] 3.48 B5:2229 [U] 59.65
Bd:51 [LYS] B5:4712 [U] 4.98 B5:4724 [U] 35.72
Bd:52 [PHE] B5:4734 [U] 3.68 B5:4795 [A] 40.18
Bd:55 [LYS] B5:4733 [G] 3.53 B5:4796 [C] 74.43
Bd:56 [GLU] B5:4733 [G] 4.38 B5:4796 [C] 67.01
Bd:56 [GLU] B5:4734 [U] 4.4 B5:4795 [A] 67.01
Bd:56 [GLU] B5:4797 [A] 3.66 B5:4732 [G] sugar:BB 67.01
Bd:62 [VAL] B5:2217 [A] 3.94 B5:2229 [U] 90.4
Bd:63 [ARG] B5:2217 [A] 3.35 B5:2229 [U] 49.46
Bd:63 [ARG] B5:2218 [A] 4.25 B5:2228 [U] 49.46
Bd:64 [ILE] B5:2216 [C] 2.7 B5:2230 [G] sugar:BB 75.34
Bd:64 [ILE] B5:2217 [A] 2.91 B5:2229 [U] 75.34
Bd:65 [ASP] B5:2216 [C] 3.68 B5:2230 [G] 78.6
Bd:66 [THR] B5:2216 [C] 3.38 B5:2230 [G] 24.25
Bd:66 [THR] B5:2217 [A] 3.56 B5:2229 [U] 24.25
Bd:66 [THR] B5:2230 [G] 3.94 B5:2216 [C] 24.25
Bd:69 [ASN] B5:2215 [U] 2.45 B5:2231 [A] base:SC, sugar:SC 99.0
Bd:69 [ASN] B5:2216 [C] 3.0 B5:2230 [G] base/AA stacks 99.0
Bd:69 [ASN] B5:2231 [A] 4.55 B5:2215 [U] 99.0
Bd:69 [ASN] B5:2232 [A] 4.88 B5:2214 [U] 99.0
Bd:70 [LYS] B5:2231 [A] 3.86 B5:2215 [U] 57.47
Bd:70 [LYS] B5:2232 [A] 3.81 B5:2214 [U] 57.47
Bd:73 [TRP] B5:2213 [A] 3.62 71.54
Bd:73 [TRP] B5:2214 [U] 3.62 B5:2232 [A] 71.54
Bd:73 [TRP] B5:2215 [U] 3.3 B5:2231 [A] sugar:SC 71.54
Bd:73 [TRP] B5:2232 [A] 3.67 B5:2214 [U] 71.54
Bd:73 [TRP] B5:2233 [G] 3.27 B5:2668 [A] 71.54
Bd:74 [ALA] B5:2233 [G] 4.7 B5:2668 [A] 37.75
Bd:75 [LYS] B5:4398 [G] 3.71 B5:4391 [C] 59.91
Bd:75 [LYS] B5:4399 [C] 3.3 B5:4390 [G] 59.91
Bd:75 [LYS] B5:4400 [C] 4.98 B5:4389 [G] 59.91
Bd:76 [GLY] B5:2233 [G] 3.45 B5:2668 [A] 89.3
Bd:76 [GLY] B5:2234 [G] 3.76 B5:2667 [OMC] 89.3
Bd:76 [GLY] B5:4399 [C] 4.54 B5:4390 [G] 89.3
Bd:76 [GLY] B5:4400 [C] 4.86 B5:4389 [G] 89.3
Bd:77 [ILE] B5:2213 [A] 3.32 69.66
Bd:77 [ILE] B5:2214 [U] 4.8 B5:2232 [A] 69.66
Bd:77 [ILE] B5:2233 [G] 3.94 B5:2668 [A] 69.66
Bd:77 [ILE] B5:4400 [C] 4.74 B5:4389 [G] 69.66
Bd:78 [ARG] B5:4382 [PSU] 3.03 base/AA stacks 46.72
Bd:78 [ARG] B5:4400 [C] 3.15 B5:4389 [G] 46.72
Bd:78 [ARG] B5:4401 [A] 3.53 B5:4388 [U] 46.72
Bd:78 [ARG] B5:4403 [U] 3.75 46.72
Bd:78 [ARG] B5:4404 [G] 3.03 B5:4387 [U] 46.72
Bd:79 [ASN] B5:4382 [PSU] 3.02 51.91
Bd:79 [ASN] B5:4399 [C] 3.09 B5:4390 [G] 51.91
Bd:79 [ASN] B5:4400 [C] 3.74 B5:4389 [G] 51.91
Bd:82 [TYR] B5:4383 [OMG] 2.77 B5:4408 [C] 23.79
Bd:82 [TYR] B5:4384 [U] 3.45 B5:4407 [G] 23.79
Bd:82 [TYR] B5:4784 [G] 3.51 B5:4741 [U] 23.79
Bd:82 [TYR] B5:4785 [U] 4.81 B5:4740 [PSU] 23.79
Bd:83 [ARG] B5:4735 [C] 4.88 B5:4794 [G] 69.2
Bd:83 [ARG] B5:4736 [G] 2.86 B5:4792 [U] 69.2
Bd:83 [ARG] B5:4784 [G] 4.61 B5:4741 [U] 69.2
Bd:83 [ARG] B5:4785 [U] 2.96 B5:4740 [PSU] 69.2
Bd:83 [ARG] B5:4786 [C] 4.79 69.2
Bd:114 [PHE] B5:4736 [G] 3.95 B5:4792 [U] 72.43
Bd:114 [PHE] B5:4737 [G] 4.77 B5:4791 [C] 72.43
Bd:115 [LYS] B5:4736 [G] 4.08 B5:4792 [U] 83.03
Bd:115 [LYS] B5:4737 [G] 3.3 B5:4791 [C] 83.03
Bd:115 [LYS] B5:4783 [A] 4.88 B5:4742 [U] 83.03
Bd:115 [LYS] B5:4784 [G] 4.67 B5:4741 [U] 83.03
Bd:116 [ASN] B5:4736 [G] 2.95 B5:4792 [U] 75.24
Bd:116 [ASN] B5:4737 [G] 3.24 B5:4791 [C] 75.24
Bd:117 [LEU] B5:4735 [C] 2.84 B5:4794 [G] sugar:BB 86.59
Bd:117 [LEU] B5:4736 [G] 3.22 B5:4792 [U] 86.59
Bd:118 [GLN] B5:4735 [C] 4.04 B5:4794 [G] 37.1
Bd:118 [GLN] B5:4736 [G] 2.99 B5:4792 [U] sugar:SC 37.1
Bd:118 [GLN] B5:4794 [G] 2.53 B5:4735 [C] base:SC 37.1
Bd:118 [GLN] B5:4795 [A] 3.47 B5:4734 [U] 37.1
Bd:119 [THR] B5:4734 [U] 4.65 B5:4795 [A] 85.28
Bd:119 [THR] B5:4735 [C] 4.56 B5:4794 [G] 85.28
Bd:119 [THR] B5:4795 [A] 3.12 B5:4734 [U] sugar:BB 85.28
Bd:119 [THR] B5:4796 [C] 3.29 B5:4733 [G] 85.28
Bd:121 [ASN] B5:4796 [C] 3.36 B5:4733 [G] 54.7
Bd:121 [ASN] B5:4797 [A] 3.18 B5:4732 [G] 54.7

logo_download Export the table of contacts

*Conservation was calculated using Rate4Site
NB: conservation is missing (completly white) for a very small minority of cases in which no homologous sequences were found (e.g. synthetic proteins 7D3J_A & 7EU9_A)

Properties of this interface

Interolog group ID Structure ID Structure description
 UniProt ID
 		ECOD label(s)
 		RFAM label(s)
 		Is ribosome? RCSB PDB link
group108 7O7Y_Bd_B5 Bd: El31, Oryctolagus cuniculus (natural) B5: 28s rRNA, Oryctolagus cuniculus (natural) G1SHG0 Ribosomal protein L31e/gp120 outer domain Eukaryotic large subunit ribosomal RNA ✔

Interologs

Total number of interologs for this interface: 6

Interface 1 Interface 2 Percentage conservation
 		Interface TM-score
 		Interface RMSD
 		Percentage identity
 		Common ECOD label(s)
 		Common RFAM label(s)
 		Explore both interfaces
6AZ3_e_2 7O7Y_Bd_B5 0.31 0.9 1.17 0.25 Ribosomal protein L31e/gp120 outer domain Eukaryotic large subunit ribosomal RNA compare
1YHQ_X_0 7O7Y_Bd_B5 0.64 0.94 1.83 0.35 Ribosomal protein L31e/gp120 outer domain compare
1VQ8_X_0 7O7Y_Bd_B5 0.66 0.94 1.78 0.35 Ribosomal protein L31e/gp120 outer domain compare
6AZ3_e_4 7O7Y_Bd_B5 0.70 0.86 1.14 0.31 Ribosomal protein L31e/gp120 outer domain Eukaryotic large subunit ribosomal RNA compare
6AZ3_e_5 7O7Y_Bd_B5 0.79 0.88 0.83 0.12 Ribosomal protein L31e/gp120 outer domain compare
6AZ3_e_1 7O7Y_Bd_B5 0.90 0.91 0.96 0.22 Ribosomal protein L31e/gp120 outer domain Eukaryotic large subunit ribosomal RNA compare