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All interfaces > All interologs > Interface groups > group109 > 1ZBI_A_C

Interface analysis

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Protein

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Licorice
Surface

RNA

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Licorice
Surface

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Chain
Chain (with hetatm)
Chainbow
Hydrophobicity
Electrostatics (surface only)
Conservation*

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Interface

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Rim - Core

Contacts -

1ZBI_A
1ZBI_C
Distance
Base Pair
Hbond nuc:res
Base Stacking
Residue conservation
A:71 [ASP] C:9 [A] 4.56 D:4 [DT] 98.91
A:71 [ASP] C:10 [U] 3.17 D:3 [DA] 98.91
A:72 [VAL] C:10 [U] 3.54 D:3 [DA] 95.01
A:72 [VAL] C:11 [U] 4.45 D:2 [DA] 95.01
A:73 [GLY] C:10 [U] 4.14 D:3 [DA] 93.26
A:73 [GLY] C:11 [U] 3.33 D:2 [DA] 93.26
A:74 [SER] C:10 [U] 2.64 D:3 [DA] sugar:SC 76.56
A:74 [SER] C:11 [U] 2.86 D:2 [DA] 76.56
A:74 [SER] C:12 [C] 4.37 D:1 [DG] 76.56
A:75 [GLN] C:11 [U] 3.59 D:2 [DA] 81.28
A:75 [GLN] C:12 [C] 3.4 D:1 [DG] 81.28
A:76 [GLY] C:10 [U] 4.42 D:3 [DA] 77.29
A:76 [GLY] C:11 [U] 3.06 D:2 [DA] sugar:BB 77.29
A:76 [GLY] C:12 [C] 4.34 D:1 [DG] 77.29
A:77 [ASN] C:9 [A] 4.58 D:4 [DT] 79.56
A:77 [ASN] C:10 [U] 3.46 D:3 [DA] 79.56
A:77 [ASN] C:11 [U] 3.99 D:2 [DA] 79.56
A:105 [ASN] C:8 [G] 4.61 D:5 [DC] 94.36
A:105 [ASN] C:9 [A] 3.12 D:4 [DT] base:SC 94.36
A:105 [ASN] C:10 [U] 3.31 D:3 [DA] sugar:SC 94.36
A:106 [ASN] C:8 [G] 3.8 D:5 [DC] base:SC 98.67
A:106 [ASN] C:9 [A] 4.54 D:4 [DT] 98.67
A:109 [GLU] C:9 [A] 2.75 D:4 [DT] sugar:SC 98.88
A:109 [GLU] C:10 [U] 3.68 D:3 [DA] 98.88
A:132 [ASN] C:8 [G] 2.75 D:5 [DC] sugar:BB 98.51
A:132 [ASN] C:9 [A] 2.79 D:4 [DT] 98.51
A:132 [ASN] C:10 [U] 3.44 D:3 [DA] 98.51
A:133 [SER] C:8 [G] 3.95 D:5 [DC] 99.0
A:133 [SER] C:9 [A] 4.48 D:4 [DT] 99.0
A:134 [GLN] C:7 [U] 2.69 D:6 [DA] base:SC, sugar:SC 43.03
A:134 [GLN] C:8 [G] 3.12 D:5 [DC] sugar:BB 43.03
A:135 [THR] C:8 [G] 3.56 D:5 [DC] 83.94
A:180 [LYS] C:8 [G] 2.73 D:5 [DC] 95.21
A:180 [LYS] C:9 [A] 2.44 D:4 [DT] 95.21
A:181 [TRP] C:9 [A] 3.97 D:4 [DT] 95.16
A:183 [THR] C:9 [A] 2.72 D:4 [DT] 97.05
A:184 [ASP] C:8 [G] 4.81 D:5 [DC] 48.09
A:188 [GLU] C:10 [U] 3.73 D:3 [DA] 96.17
A:192 [ASP] C:10 [U] 4.38 D:3 [DA] 98.91
A:193 [TYR] C:11 [U] 4.8 D:2 [DA] 83.77
A:196 [LYS] C:12 [C] 4.52 D:1 [DG] 98.85

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*Conservation was calculated using Rate4Site
NB: conservation is missing (completly white) for a very small minority of cases in which no homologous sequences were found (e.g. synthetic proteins 7D3J_A & 7EU9_A)

Properties of this interface

Interolog group ID Structure ID Structure description
 UniProt ID
 		ECOD label(s)
 		RFAM label(s)
 		Is ribosome? RCSB PDB link
group109 1ZBI_A_C A: Ribonuclease h-related protein, Bacillus halodurans (genetically engineered) C: N/A Q9KEI9 Ribonuclease H-like ✘

Interologs

Total number of interologs for this interface: 6

Interface 1 Interface 2 Percentage conservation
 		Interface TM-score
 		Interface RMSD
 		Percentage identity
 		Common ECOD label(s)
 		Common RFAM label(s)
 		Explore both interfaces
1ZBI_A_C 2QKB_A_C 0.86 0.67 2.13 0.17 Ribonuclease H-like compare
1ZBI_A_C 6BSG_A_R 0.52 0.62 2.08 0.23 Ribonuclease H-like compare
1ZBI_A_C 4H8K_A_C 0.90 0.63 1.41 0.17 Ribonuclease H-like compare
1ZBI_A_C 6VRD_A_B 0.92 0.65 1.28 0.27 Ribonuclease H-like compare
1ZBI_A_C 5VAJ_B_C 0.98 0.95 0.24 0.17 Ribonuclease H-like compare
1ZBI_A_C 1ZBL_A_C 0.97 0.95 0.23 0.17 Ribonuclease H-like compare