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All interfaces > All interologs > Interface groups > group109 > 2QKB_A_C

Interface analysis

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Protein

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Licorice
Surface

RNA

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Licorice
Surface

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Chain
Chain (with hetatm)
Chainbow
Hydrophobicity
Electrostatics (surface only)
Conservation*

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Interface

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Rim - Core

Contacts -

2QKB_A
2QKB_C
Distance
Base Pair
Hbond nuc:res
Base Stacking
Residue conservation
A:145 [ASP] C:11 [A] 4.38 D:30 [DT] 96.46
A:145 [ASP] C:12 [C] 2.97 D:29 [DG] 96.46
A:146 [GLY] C:11 [A] 4.81 D:30 [DT] 96.86
A:146 [GLY] C:12 [C] 3.31 D:29 [DG] 96.86
A:147 [CYS] C:12 [C] 3.51 D:29 [DG] 84.04
A:147 [CYS] C:13 [C] 3.68 D:28 [DG] 84.04
A:148 [CYS] C:12 [C] 2.71 D:29 [DG] sugar:BB 81.71
A:148 [CYS] C:13 [C] 3.3 D:28 [DG] 81.71
A:149 [SER] C:12 [C] 4.79 D:29 [DG] 2.69
A:149 [SER] C:13 [C] 3.69 D:28 [DG] 2.69
A:149 [SER] C:14 [U] 3.73 D:27 [DA] 2.69
A:150 [SER] C:13 [C] 3.08 D:28 [DG] 65.72
A:150 [SER] C:14 [U] 3.7 D:27 [DA] 65.72
A:151 [ASN] C:11 [A] 4.41 D:30 [DT] 86.16
A:151 [ASN] C:12 [C] 3.09 D:29 [DG] base:SC 86.16
A:151 [ASN] C:13 [C] 3.26 D:28 [DG] sugar:BB 86.16
A:153 [ARG] C:13 [C] 4.03 D:28 [DG] 34.54
A:153 [ARG] C:14 [U] 3.11 D:27 [DA] 34.54
A:182 [ASN] C:11 [A] 2.95 D:30 [DT] base:SC 88.54
A:182 [ASN] C:12 [C] 3.14 D:29 [DG] 88.54
A:183 [GLN] C:11 [A] 4.82 D:30 [DT] 82.44
A:186 [GLU] C:11 [A] 3.09 D:30 [DT] sugar:SC 98.19
A:186 [GLU] C:12 [C] 3.3 D:29 [DG] 98.19
A:210 [ASN] C:10 [C] 2.66 D:31 [DG] sugar:BB 98.48
A:210 [ASN] C:11 [A] 2.79 D:30 [DT] 98.48
A:210 [ASN] C:12 [C] 3.2 D:29 [DG] 98.48
A:211 [SER] C:10 [C] 3.89 D:31 [DG] 99.0
A:211 [SER] C:11 [A] 4.88 D:30 [DT] 99.0
A:212 [MSE] C:9 [A] 4.53 D:32 [DT] 47.11
A:212 [MSE] C:10 [C] 3.1 D:31 [DG] sugar:BB 47.11
A:260 [HIS] C:10 [C] 3.29 D:31 [DG] 64.17
A:260 [HIS] C:11 [A] 3.86 D:30 [DT] 64.17
A:261 [VAL] C:11 [A] 4.26 D:30 [DT] 91.57
A:262 [PRO] C:11 [A] 3.49 D:30 [DT] 54.81
A:263 [GLY] C:11 [A] 2.81 D:30 [DT] 75.02
A:264 [HIS] C:12 [C] 3.31 D:29 [DG] 92.12
A:274 [ASP] C:12 [C] 4.51 D:29 [DG] 94.11
A:274 [ASP] C:13 [C] 4.66 D:28 [DG] 94.11
A:278 [ARG] C:13 [C] 3.33 D:28 [DG] 62.24

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*Conservation was calculated using Rate4Site
NB: conservation is missing (completly white) for a very small minority of cases in which no homologous sequences were found (e.g. synthetic proteins 7D3J_A & 7EU9_A)

Properties of this interface

Interolog group ID Structure ID Structure description
 UniProt ID
 		ECOD label(s)
 		RFAM label(s)
 		Is ribosome? RCSB PDB link
group109 2QKB_A_C A: Ribonuclease h1, Homo sapiens (genetically engineered) C: N/A O60930 Ribonuclease H-like ✘

Interologs

Total number of interologs for this interface: 6

Interface 1 Interface 2 Percentage conservation
 		Interface TM-score
 		Interface RMSD
 		Percentage identity
 		Common ECOD label(s)
 		Common RFAM label(s)
 		Explore both interfaces
1ZBI_A_C 2QKB_A_C 0.86 0.67 2.13 0.17 Ribonuclease H-like compare
1ZBL_A_C 2QKB_A_C 0.92 0.67 2.33 0.25 Ribonuclease H-like compare
2QKB_A_C 5VAJ_B_C 0.89 0.66 1.51 0.33 Ribonuclease H-like compare
2QKB_A_C 4H8K_A_C 0.95 0.79 0.79 0.48 Ribonuclease H-like compare
2QKB_A_C 6VRD_A_B 0.94 0.93 1.17 0.17 Ribonuclease H-like compare
2QKB_A_C 6BSG_A_R 0.56 0.7 1.02 0.0 Ribonuclease H-like compare