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All interfaces > All interologs > Interface groups > group109 > 2QKB_A_C vs 5VAJ_B_C

Interface analysis


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Common contacts -

2QKB_A
2QKB_C
5VAJ_B
5VAJ_C
Conserved?
A:186 [GLU] C:11 [A] B:109 [GLU] C:4 [A] ✔
A:186 [GLU] C:12 [C] B:109 [GLU] C:5 [C] ✔
A:212 [MSE] C:9 [A] B:134 [GLN] C:2 [A] ✔
A:212 [MSE] C:10 [C] B:134 [GLN] C:3 [C] ✔
A:147 [CYS] C:12 [C] B:73 [GLY] C:5 [C] ✔
A:147 [CYS] C:13 [C] B:73 [GLY] C:6 [C] ✔
A:261 [VAL] C:11 [A] B:181 [TRP] C:4 [A] ✔
A:263 [GLY] C:11 [A] B:183 [THR] C:4 [A] ✔
A:211 [SER] C:10 [C] B:133 [SER] C:3 [C] ✔
A:211 [SER] C:11 [A] B:133 [SER] C:4 [A] ✔
A:148 [CYS] C:12 [C] B:74 [SER] C:5 [C] ✔
A:148 [CYS] C:13 [C] B:74 [SER] C:6 [C] ✔
A:182 [ASN] C:11 [A] B:105 [ASN] C:4 [A] ✔
A:182 [ASN] C:12 [C] B:105 [ASN] C:5 [C] ✔
A:150 [SER] C:13 [C] B:76 [GLY] C:6 [C] ✔
A:150 [SER] C:14 [U] B:76 [GLY] C:7 [U] ✔
A:145 [ASP] C:11 [A] B:71 [ASP] C:4 [A] ✔
A:145 [ASP] C:12 [C] B:71 [ASP] C:5 [C] ✔
A:151 [ASN] C:11 [A] B:77 [ASN] C:4 [A] ✔
A:151 [ASN] C:12 [C] B:77 [ASN] C:5 [C] ✔
A:151 [ASN] C:13 [C] B:77 [ASN] C:6 [C] ✔
A:183 [GLN] C:11 [A] B:106 [ASN] C:4 [A] ✔
A:274 [ASP] C:12 [C] B:192 [ASP] C:5 [C] ✔
A:210 [ASN] C:10 [C] B:132 [ASN] C:3 [C] ✔
A:210 [ASN] C:11 [A] B:132 [ASN] C:4 [A] ✔
A:210 [ASN] C:12 [C] B:132 [ASN] C:5 [C] ✔
A:149 [SER] C:13 [C] B:75 [GLN] C:6 [C] ✔
A:149 [SER] C:14 [U] B:75 [GLN] C:7 [U] ✔
A:260 [HIS] C:10 [C] B:180 [LYS] C:3 [C] ✔
A:260 [HIS] C:11 [A] B:180 [LYS] C:4 [A] ✔
A:146 [GLY] C:12 [C] B:72 [VAL] C:5 [C] ✔
A:274 [ASP] C:13 [C] B:192 [ASP] C:6 [C] ❌ 5VAJ_B_C
A:149 [SER] C:12 [C] B:75 [GLN] C:5 [C] ❌ 5VAJ_B_C
A:146 [GLY] C:11 [A] B:72 [VAL] C:4 [A] ❌ 5VAJ_B_C
A:263 [GLY] C:10 [C] B:183 [THR] C:3 [C] ❌ 2QKB_A_C
A:146 [GLY] C:13 [C] B:72 [VAL] C:6 [C] ❌ 2QKB_A_C
A:148 [CYS] C:14 [U] B:74 [SER] C:7 [U] ❌ 2QKB_A_C
A:150 [SER] C:12 [C] B:76 [GLY] C:5 [C] ❌ 2QKB_A_C
A:278 [ARG] C:13 [C] B:194 [GLY] C:6 [C] ❌ 5VAJ_B:194 no longer at interface
A:262 [PRO] C:11 [A] B:182 [GLN] C:4 [A] ❌ 5VAJ_B:182 no longer at interface
A:264 [HIS] C:12 [C] B:184 [ASP] C:5 [C] ❌ 5VAJ_B:184 no longer at interface
A:213 [PHE] C:10 [C] B:135 [THR] C:3 [C] ❌ 2QKB_A:213 no longer at interface
A:268 [ILE] C:12 [C] B:188 [GLU] C:5 [C] ❌ 2QKB_A:268 no longer at interface
A:270 [ASN] C:12 [C] B:189 [ILE] C:5 [C] ❌ 2QKB_A:270 no longer at interface
A:275 [ARG] C:13 [C] B:193 [TYR] C:6 [C] ❌ 2QKB_A:275 no longer at interface

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Properties of this pair

Common ECOD label(s)
 Common RFAM label(s)
 Interface TM-score
 Interface RMSD
 Percentage identity
 Protein TM-score
 RNA TM-score
 Protein coverage
 RNA coverage
 Percentage conservation
 Apolar conservation
 H-bond conservation
 Percentage switching out
Ribonuclease H-like 0.66 1.51 0.33 0.64 0.35 0.81 1.0 0.89 0.82 0.63 0.50


Other pairs involving 2QKB_A_C or 5VAJ_B_C

Total number of entries: 11

Interface 1 Interface 2 Percentage conservation
 		Interface TM-score
 		Interface RMSD
 		Percentage identity
 		Common ECOD label(s)
 		Common RFAM label(s)
 		Explore both interfaces
1ZBI_A_C 2QKB_A_C 0.86 0.67 2.13 0.17 Ribonuclease H-like compare
1ZBI_A_C 5VAJ_B_C 0.98 0.95 0.24 0.17 Ribonuclease H-like compare
1ZBL_A_C 5VAJ_B_C 0.97 0.97 0.36 0.85 Ribonuclease H-like compare
1ZBL_A_C 2QKB_A_C 0.92 0.67 2.33 0.25 Ribonuclease H-like compare
2QKB_A_C 5VAJ_B_C 0.89 0.66 1.51 0.33 Ribonuclease H-like compare
2QKB_A_C 4H8K_A_C 0.95 0.79 0.79 0.48 Ribonuclease H-like compare
2QKB_A_C 6VRD_A_B 0.94 0.93 1.17 0.17 Ribonuclease H-like compare
2QKB_A_C 6BSG_A_R 0.56 0.7 1.02 0.0 Ribonuclease H-like compare
4H8K_A_C 5VAJ_B_C 0.92 0.63 1.53 0.48 Ribonuclease H-like compare
5VAJ_B_C 6VRD_A_B 0.91 0.65 1.27 0.17 Ribonuclease H-like compare
5VAJ_B_C 6BSG_A_R 0.57 0.61 1.5 0.0 Ribonuclease H-like compare