Interface analysis
Style
Protein
CartoonLicorice
Surface
RNA
CartoonLicorice
Surface
Color
StructureStructure (with hetatm)
Chain
Chainbow
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InterfaceRNA
Protein
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Interface
show interface as licoriceCommon contacts -
| 2QKB_A
|
2QKB_C
|
6BSG_A
|
6BSG_R
|
Conserved?
|
|---|---|---|---|---|
| A:186 [GLU] | C:11 [A] | A:478 [GLU] | R:24 [C] | ✔ |
| A:212 [MSE] | C:9 [A] | A:500 [GLN] | R:22 [G] | ✔ |
| A:212 [MSE] | C:10 [C] | A:500 [GLN] | R:23 [G] | ✔ |
| A:261 [VAL] | C:11 [A] | A:536 [VAL] | R:24 [C] | ✔ |
| A:263 [GLY] | C:11 [A] | A:538 [ALA] | R:24 [C] | ✔ |
| A:211 [SER] | C:10 [C] | A:499 [SER] | R:23 [G] | ✔ |
| A:211 [SER] | C:11 [A] | A:499 [SER] | R:24 [C] | ✔ |
| A:148 [CYS] | C:12 [C] | A:446 [ALA] | R:25 [A] | ✔ |
| A:182 [ASN] | C:11 [A] | A:474 [ASN] | R:24 [C] | ✔ |
| A:182 [ASN] | C:12 [C] | A:474 [ASN] | R:25 [A] | ✔ |
| A:151 [ASN] | C:12 [C] | A:448 [ARG] | R:25 [A] | ✔ |
| A:151 [ASN] | C:13 [C] | A:448 [ARG] | R:26 [U] | ✔ |
| A:262 [PRO] | C:11 [A] | A:537 [PRO] | R:24 [C] | ✔ |
| A:264 [HIS] | C:12 [C] | A:539 [HIS] | R:25 [A] | ✔ |
| A:183 [GLN] | C:11 [A] | A:475 [GLN] | R:24 [C] | ✔ |
| A:274 [ASP] | C:12 [C] | A:549 [ASP] | R:25 [A] | ✔ |
| A:210 [ASN] | C:10 [C] | A:498 [ASP] | R:23 [G] | ✔ |
| A:210 [ASN] | C:11 [A] | A:498 [ASP] | R:24 [C] | ✔ |
| A:210 [ASN] | C:12 [C] | A:498 [ASP] | R:25 [A] | ✔ |
| A:260 [HIS] | C:10 [C] | A:535 [TRP] | R:23 [G] | ✔ |
| A:260 [HIS] | C:11 [A] | A:535 [TRP] | R:24 [C] | ✔ |
| A:186 [GLU] | C:12 [C] | A:478 [GLU] | R:25 [A] | ❌ 6BSG_A_R |
| A:148 [CYS] | C:13 [C] | A:446 [ALA] | R:26 [U] | ❌ 6BSG_A_R |
| A:151 [ASN] | C:11 [A] | A:448 [ARG] | R:24 [C] | ❌ 6BSG_A_R |
| A:274 [ASP] | C:13 [C] | A:549 [ASP] | R:26 [U] | ❌ 6BSG_A_R |
| A:182 [ASN] | C:10 [C] | A:474 [ASN] | R:23 [G] | ❌ 2QKB_A_C |
| A:183 [GLN] | C:9 [A] | A:475 [GLN] | R:22 [G] | ❌ 2QKB_A_C |
| A:183 [GLN] | C:10 [C] | A:475 [GLN] | R:23 [G] | ❌ 2QKB_A_C |
| A:262 [PRO] | C:10 [C] | A:537 [PRO] | R:23 [G] | ❌ 2QKB_A_C |
| A:263 [GLY] | C:12 [C] | A:538 [ALA] | R:25 [A] | ❌ 2QKB_A_C |
| A:264 [HIS] | C:11 [A] | A:539 [HIS] | R:24 [C] | ❌ 2QKB_A_C |
| A:147 [CYS] | C:12 [C] | A:445 [ALA] | R:25 [A] | ❌ 6BSG_A:445 no longer at interface |
| A:147 [CYS] | C:13 [C] | A:445 [ALA] | R:26 [U] | ❌ 6BSG_A:445 no longer at interface |
| A:278 [ARG] | C:13 [C] | A:553 [SER] | R:26 [U] | ❌ 6BSG_A:553 no longer at interface |
| A:145 [ASP] | C:11 [A] | A:443 [ASP] | R:24 [C] | ❌ 6BSG_A:443 no longer at interface |
| A:145 [ASP] | C:12 [C] | A:443 [ASP] | R:25 [A] | ❌ 6BSG_A:443 no longer at interface |
| A:149 [SER] | C:12 [C] | A:447 [SER] | R:25 [A] | ❌ 6BSG_A:447 no longer at interface |
| A:149 [SER] | C:13 [C] | A:447 [SER] | R:26 [U] | ❌ 6BSG_A:447 no longer at interface |
| A:146 [GLY] | C:11 [A] | A:444 [GLY] | R:24 [C] | ❌ 6BSG_A:444 no longer at interface |
| A:146 [GLY] | C:12 [C] | A:444 [GLY] | R:25 [A] | ❌ 6BSG_A:444 no longer at interface |
| A:213 [PHE] | C:9 [A] | A:501 [TYR] | R:22 [G] | ❌ 2QKB_A:213 no longer at interface |
| A:213 [PHE] | C:10 [C] | A:501 [TYR] | R:23 [G] | ❌ 2QKB_A:213 no longer at interface |
| A:282 [LYS] | C:13 [C] | A:557 [ARG] | R:26 [U] | ❌ 2QKB_A:282 no longer at interface |
| A:282 [LYS] | C:12 [C] | A:557 [ARG] | R:25 [A] | ❌ 2QKB_A:282 no longer at interface |
Export the table of contacts
Properties of this pair
|
Common ECOD label(s) |
Common RFAM label(s) |
Interface TM-score |
Interface RMSD |
Percentage identity |
Protein TM-score |
RNA TM-score |
Protein coverage |
RNA coverage |
Percentage conservation |
Apolar conservation |
H-bond conservation |
Percentage switching out |
|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Ribonuclease H-like | 0.7 | 1.02 | 0.00 | 0.72 | 0.3 | 0.67 | 0.83 | 0.56 | 0.41 | 0.26 | 0.57 |
Other pairs involving 2QKB_A_C or 6BSG_A_R
Total number of entries: 11
| Interface 1 | Interface 2 |
Percentage conservation |
Interface TM-score |
Interface RMSD |
Percentage identity |
Common ECOD label(s) |
Common RFAM label(s) |
Explore both interfaces |
|---|---|---|---|---|---|---|---|---|
| 5VAJ_B_C | 6BSG_A_R | 0.57 | 0.61 | 1.5 | 0.0 | Ribonuclease H-like | compare | |
| 1ZBI_A_C | 2QKB_A_C | 0.86 | 0.67 | 2.13 | 0.17 | Ribonuclease H-like | compare | |
| 1ZBI_A_C | 6BSG_A_R | 0.52 | 0.62 | 2.08 | 0.23 | Ribonuclease H-like | compare | |
| 4H8K_A_C | 6BSG_A_R | 0.63 | 0.7 | 0.75 | 0.0 | Ribonuclease H-like | compare | |
| 1ZBL_A_C | 2QKB_A_C | 0.92 | 0.67 | 2.33 | 0.25 | Ribonuclease H-like | compare | |
| 1ZBL_A_C | 6BSG_A_R | 0.55 | 0.61 | 2.22 | 0.0 | Ribonuclease H-like | compare | |
| 6BSG_A_R | 6VRD_A_B | 0.59 | 0.71 | 1.55 | 0.25 | Ribonuclease H-like | compare | |
| 2QKB_A_C | 5VAJ_B_C | 0.89 | 0.66 | 1.51 | 0.33 | Ribonuclease H-like | compare | |
| 2QKB_A_C | 4H8K_A_C | 0.95 | 0.79 | 0.79 | 0.48 | Ribonuclease H-like | compare | |
| 2QKB_A_C | 6VRD_A_B | 0.94 | 0.93 | 1.17 | 0.17 | Ribonuclease H-like | compare | |
| 2QKB_A_C | 6BSG_A_R | 0.56 | 0.7 | 1.02 | 0.0 | Ribonuclease H-like | compare |