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All interfaces > All interologs > Interface groups > group109 > 4H8K_A_C

Interface analysis

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Protein

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Licorice
Surface

RNA

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Licorice
Surface

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Chain
Chain (with hetatm)
Chainbow
Hydrophobicity
Electrostatics (surface only)
Conservation*

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Interface

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Rim - Core

Contacts -

4H8K_A
4H8K_C
Distance
Base Pair
Hbond nuc:res
Base Stacking
Residue conservation
A:9 [ASP] C:6 [C] 4.48 D:9 [DG] 98.81
A:10 [GLY] C:6 [C] 3.76 D:9 [DG] 98.61
A:10 [GLY] C:7 [C] 4.42 D:8 [DG] 98.61
A:11 [GLY] C:6 [C] 3.62 D:9 [DG] 82.43
A:11 [GLY] C:7 [C] 3.64 D:8 [DG] 82.43
A:12 [ALA] C:6 [C] 2.5 D:9 [DG] sugar:BB 84.46
A:12 [ALA] C:7 [C] 3.75 D:8 [DG] 84.46
A:13 [ARG] C:6 [C] 4.59 D:9 [DG] 70.21
A:13 [ARG] C:7 [C] 3.49 D:8 [DG] 70.21
A:13 [ARG] C:8 [U] 3.4 D:7 [DA] 70.21
A:14 [GLY] C:7 [C] 2.89 D:8 [DG] sugar:BB 67.09
A:14 [GLY] C:8 [U] 4.22 D:7 [DA] 67.09
A:15 [ASN] C:5 [A] 4.65 D:10 [DT] 91.95
A:15 [ASN] C:6 [C] 3.39 D:9 [DG] 91.95
A:15 [ASN] C:7 [C] 3.95 D:8 [DG] 91.95
A:45 [ASN] C:5 [A] 3.07 D:10 [DT] base:SC 93.6
A:45 [ASN] C:6 [C] 3.21 D:9 [DG] 93.6
A:46 [ASN] C:5 [A] 4.78 D:10 [DT] 95.04
A:49 [GLU] C:5 [A] 3.7 D:10 [DT] 98.72
A:49 [GLU] C:6 [C] 4.52 D:9 [DG] 98.72
A:77 [ASN] C:4 [C] 4.04 D:11 [DG] 98.92
A:77 [ASN] C:5 [A] 2.66 D:10 [DT] 98.92
A:77 [ASN] C:6 [C] 4.04 D:9 [DG] 98.92
A:78 [SER] C:4 [C] 3.77 D:11 [DG] 99.0
A:78 [SER] C:5 [A] 4.49 D:10 [DT] 99.0
A:79 [GLU] C:3 [A] 2.27 D:12 [DT] sugar:SC 59.26
A:79 [GLU] C:4 [C] 2.86 D:11 [DG] sugar:SC, sugar:BB 59.26
A:80 [LEU] C:4 [C] 4.86 D:11 [DG] 82.55
A:83 [ARG] C:3 [A] 3.89 D:12 [DT] 56.88
A:89 [TYR] C:3 [A] 4.41 D:12 [DT] 44.21
A:118 [HIS] C:4 [C] 3.73 D:11 [DG] 84.74
A:118 [HIS] C:5 [A] 4.55 D:10 [DT] 84.74
A:119 [ILE] C:5 [A] 4.7 D:10 [DT] 85.62
A:120 [PRO] C:5 [A] 4.77 D:10 [DT] 62.04
A:121 [ARG] C:5 [A] 3.15 D:10 [DT] 91.43
A:121 [ARG] C:6 [C] 3.43 D:9 [DG] 91.43
A:128 [ASP] C:6 [C] 4.72 D:9 [DG] 94.46
A:132 [ASN] C:7 [C] 4.82 D:8 [DG] 78.93

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*Conservation was calculated using Rate4Site
NB: conservation is missing (completly white) for a very small minority of cases in which no homologous sequences were found (e.g. synthetic proteins 7D3J_A & 7EU9_A)

Properties of this interface

Interolog group ID Structure ID Structure description
 UniProt ID
 		ECOD label(s)
 		RFAM label(s)
 		Is ribosome? RCSB PDB link
group109 4H8K_A_C A: Ribonuclease h, Uncultured organism (genetically engineered) C: N/A E0X767 Ribonuclease H-like ✘

Interologs

Total number of interologs for this interface: 6

Interface 1 Interface 2 Percentage conservation
 		Interface TM-score
 		Interface RMSD
 		Percentage identity
 		Common ECOD label(s)
 		Common RFAM label(s)
 		Explore both interfaces
1ZBI_A_C 4H8K_A_C 0.90 0.63 1.41 0.17 Ribonuclease H-like compare
4H8K_A_C 5VAJ_B_C 0.92 0.63 1.53 0.48 Ribonuclease H-like compare
4H8K_A_C 6VRD_A_B 0.94 0.76 1.42 0.17 Ribonuclease H-like compare
4H8K_A_C 6BSG_A_R 0.63 0.7 0.75 0.0 Ribonuclease H-like compare
1ZBL_A_C 4H8K_A_C 0.93 0.65 1.52 0.4 Ribonuclease H-like compare
2QKB_A_C 4H8K_A_C 0.95 0.79 0.79 0.48 Ribonuclease H-like compare