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All interfaces > All interologs > Interface groups > group109 > 4H8K_A_C vs 6VRD_A_B

Interface analysis


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Common contacts -

4H8K_A
4H8K_C
6VRD_A
6VRD_B
Conserved?
A:77 [ASN] C:4 [C] A:210 [ASN] B:13 [G] ✔
A:77 [ASN] C:5 [A] A:210 [ASN] B:14 [A] ✔
A:77 [ASN] C:6 [C] A:210 [ASN] B:15 [G] ✔
A:119 [ILE] C:5 [A] A:261 [VAL] B:14 [A] ✔
A:15 [ASN] C:5 [A] A:151 [ASN] B:14 [A] ✔
A:15 [ASN] C:6 [C] A:151 [ASN] B:15 [G] ✔
A:15 [ASN] C:7 [C] A:151 [ASN] B:16 [U] ✔
A:12 [ALA] C:6 [C] A:148 [CYS] B:15 [G] ✔
A:12 [ALA] C:7 [C] A:148 [CYS] B:16 [U] ✔
A:121 [ARG] C:5 [A] A:263 [GLY] B:14 [A] ✔
A:10 [GLY] C:6 [C] A:146 [GLY] B:15 [G] ✔
A:78 [SER] C:4 [C] A:211 [SER] B:13 [G] ✔
A:78 [SER] C:5 [A] A:211 [SER] B:14 [A] ✔
A:120 [PRO] C:5 [A] A:262 [PRO] B:14 [A] ✔
A:11 [GLY] C:6 [C] A:147 [CYS] B:15 [G] ✔
A:11 [GLY] C:7 [C] A:147 [CYS] B:16 [U] ✔
A:13 [ARG] C:6 [C] A:149 [SER] B:15 [G] ✔
A:13 [ARG] C:7 [C] A:149 [SER] B:16 [U] ✔
A:13 [ARG] C:8 [U] A:149 [SER] B:17 [G] ✔
A:132 [ASN] C:7 [C] A:278 [ARG] B:16 [U] ✔
A:80 [LEU] C:4 [C] A:213 [PHE] B:13 [G] ✔
A:79 [GLU] C:3 [A] A:212 [MET] B:12 [U] ✔
A:79 [GLU] C:4 [C] A:212 [MET] B:13 [G] ✔
A:83 [ARG] C:3 [A] A:216 [ASN] B:12 [U] ✔
A:46 [ASN] C:5 [A] A:183 [GLN] B:14 [A] ✔
A:45 [ASN] C:5 [A] A:182 [ASN] B:14 [A] ✔
A:45 [ASN] C:6 [C] A:182 [ASN] B:15 [G] ✔
A:9 [ASP] C:6 [C] A:145 [ASP] B:15 [G] ✔
A:49 [GLU] C:5 [A] A:186 [GLU] B:14 [A] ✔
A:49 [GLU] C:6 [C] A:186 [GLU] B:15 [G] ✔
A:118 [HIS] C:4 [C] A:260 [HIS] B:13 [G] ✔
A:118 [HIS] C:5 [A] A:260 [HIS] B:14 [A] ✔
A:14 [GLY] C:7 [C] A:150 [SER] B:16 [U] ✔
A:14 [GLY] C:8 [U] A:150 [SER] B:17 [G] ✔
A:121 [ARG] C:6 [C] A:263 [GLY] B:15 [G] ❌ 6VRD_A_B
A:10 [GLY] C:7 [C] A:146 [GLY] B:16 [U] ❌ 6VRD_A_B
A:45 [ASN] C:4 [C] A:182 [ASN] B:13 [G] ❌ 4H8K_A_C
A:46 [ASN] C:4 [C] A:183 [GLN] B:13 [G] ❌ 4H8K_A_C
A:89 [TYR] C:3 [A] A:222 [VAL] B:12 [U] ❌ 6VRD_A:222 no longer at interface
A:128 [ASP] C:6 [C] A:274 [ASP] B:15 [G] ❌ 6VRD_A:274 no longer at interface

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Properties of this pair

Common ECOD label(s)
 Common RFAM label(s)
 Interface TM-score
 Interface RMSD
 Percentage identity
 Protein TM-score
 RNA TM-score
 Protein coverage
 RNA coverage
 Percentage conservation
 Apolar conservation
 H-bond conservation
 Percentage switching out
Ribonuclease H-like 0.76 1.42 0.17 0.76 0.17 0.91 1.0 0.94 0.90 0.43 0.33


Other pairs involving 4H8K_A_C or 6VRD_A_B

Total number of entries: 11

Interface 1 Interface 2 Percentage conservation
 		Interface TM-score
 		Interface RMSD
 		Percentage identity
 		Common ECOD label(s)
 		Common RFAM label(s)
 		Explore both interfaces
1ZBI_A_C 4H8K_A_C 0.90 0.63 1.41 0.17 Ribonuclease H-like compare
1ZBI_A_C 6VRD_A_B 0.92 0.65 1.28 0.27 Ribonuclease H-like compare
1ZBL_A_C 6VRD_A_B 0.92 0.67 1.41 0.17 Ribonuclease H-like compare
1ZBL_A_C 4H8K_A_C 0.93 0.65 1.52 0.4 Ribonuclease H-like compare
2QKB_A_C 4H8K_A_C 0.95 0.79 0.79 0.48 Ribonuclease H-like compare
2QKB_A_C 6VRD_A_B 0.94 0.93 1.17 0.17 Ribonuclease H-like compare
4H8K_A_C 5VAJ_B_C 0.92 0.63 1.53 0.48 Ribonuclease H-like compare
4H8K_A_C 6VRD_A_B 0.94 0.76 1.42 0.17 Ribonuclease H-like compare
4H8K_A_C 6BSG_A_R 0.63 0.7 0.75 0.0 Ribonuclease H-like compare
5VAJ_B_C 6VRD_A_B 0.91 0.65 1.27 0.17 Ribonuclease H-like compare
6BSG_A_R 6VRD_A_B 0.59 0.71 1.55 0.25 Ribonuclease H-like compare