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All interfaces > All interologs > Interface groups > group109 > 5VAJ_B_C

Interface analysis

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Protein

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Licorice
Surface

RNA

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Licorice
Surface

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Chain
Chain (with hetatm)
Chainbow
Hydrophobicity
Electrostatics (surface only)
Conservation*

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Interface

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Rim - Core

Contacts -

5VAJ_B
5VAJ_C
Distance
Base Pair
Hbond nuc:res
Base Stacking
Residue conservation
B:71 [ASP] C:4 [A] 4.66 D:9 [DT] 98.91
B:71 [ASP] C:5 [C] 3.06 D:8 [DG] 98.91
B:72 [VAL] C:5 [C] 3.45 D:8 [DG] 93.87
B:72 [VAL] C:6 [C] 4.42 D:7 [DG] 93.87
B:73 [GLY] C:5 [C] 4.04 D:8 [DG] 93.95
B:73 [GLY] C:6 [C] 3.3 D:7 [DG] 93.95
B:74 [SER] C:5 [C] 2.66 D:8 [DG] sugar:SC 75.22
B:74 [SER] C:6 [C] 2.94 D:7 [DG] 75.22
B:74 [SER] C:7 [U] 4.25 D:6 [DA] 75.22
B:75 [GLN] C:6 [C] 3.73 D:7 [DG] 82.23
B:75 [GLN] C:7 [U] 3.4 D:6 [DA] 82.23
B:76 [GLY] C:5 [C] 4.42 D:8 [DG] 80.06
B:76 [GLY] C:6 [C] 3.04 D:7 [DG] sugar:BB 80.06
B:76 [GLY] C:7 [U] 4.06 D:6 [DA] 80.06
B:77 [ASN] C:4 [A] 4.57 D:9 [DT] 77.99
B:77 [ASN] C:5 [C] 3.71 D:8 [DG] 77.99
B:77 [ASN] C:6 [C] 3.87 D:7 [DG] 77.99
B:105 [ASN] C:4 [A] 2.96 D:9 [DT] base:SC 94.22
B:105 [ASN] C:5 [C] 3.38 D:8 [DG] sugar:SC 94.22
B:106 [ASN] C:4 [A] 4.6 D:9 [DT] 98.66
B:109 [GLU] C:4 [A] 2.89 D:9 [DT] sugar:SC 98.88
B:109 [GLU] C:5 [C] 3.65 D:8 [DG] 98.88
B:132 [ASN] C:3 [C] 2.68 D:10 [DG] sugar:BB 98.51
B:132 [ASN] C:4 [A] 2.84 D:9 [DT] 98.51
B:132 [ASN] C:5 [C] 3.21 D:8 [DG] 98.51
B:133 [SER] C:3 [C] 3.86 D:10 [DG] 99.0
B:133 [SER] C:4 [A] 4.54 D:9 [DT] 99.0
B:134 [GLN] C:2 [A] 3.37 D:11 [DT] base:SC 36.34
B:134 [GLN] C:3 [C] 3.12 D:10 [DG] sugar:BB 36.34
B:135 [THR] C:3 [C] 4.59 D:10 [DG] 81.4
B:180 [LYS] C:3 [C] 3.03 D:10 [DG] 95.09
B:180 [LYS] C:4 [A] 2.98 D:9 [DT] 95.09
B:181 [TRP] C:4 [A] 4.04 D:9 [DT] 95.07
B:183 [THR] C:3 [C] 4.94 D:10 [DG] 97.01
B:183 [THR] C:4 [A] 2.55 D:9 [DT] 97.01
B:188 [GLU] C:5 [C] 3.85 D:8 [DG] 96.11
B:189 [ILE] C:5 [C] 4.99 D:8 [DG] 88.46
B:192 [ASP] C:5 [C] 4.35 D:8 [DG] 98.91
B:193 [TYR] C:6 [C] 4.72 D:7 [DG] 82.87

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*Conservation was calculated using Rate4Site
NB: conservation is missing (completly white) for a very small minority of cases in which no homologous sequences were found (e.g. synthetic proteins 7D3J_A & 7EU9_A)

Properties of this interface

Interolog group ID Structure ID Structure description
 UniProt ID
 		ECOD label(s)
 		RFAM label(s)
 		Is ribosome? RCSB PDB link
group109 5VAJ_B_C B: Ribonuclease h, Bacillus halodurans (genetically engineered) C: Synthetic construct (synthetic) Q9KEI9 Ribonuclease H-like ✘

Interologs

Total number of interologs for this interface: 6

Interface 1 Interface 2 Percentage conservation
 		Interface TM-score
 		Interface RMSD
 		Percentage identity
 		Common ECOD label(s)
 		Common RFAM label(s)
 		Explore both interfaces
5VAJ_B_C 6VRD_A_B 0.91 0.65 1.27 0.17 Ribonuclease H-like compare
5VAJ_B_C 6BSG_A_R 0.57 0.61 1.5 0.0 Ribonuclease H-like compare
1ZBI_A_C 5VAJ_B_C 0.98 0.95 0.24 0.17 Ribonuclease H-like compare
4H8K_A_C 5VAJ_B_C 0.92 0.63 1.53 0.48 Ribonuclease H-like compare
1ZBL_A_C 5VAJ_B_C 0.97 0.97 0.36 0.85 Ribonuclease H-like compare
2QKB_A_C 5VAJ_B_C 0.89 0.66 1.51 0.33 Ribonuclease H-like compare