Interface analysis
Style
Protein
CartoonLicorice
Surface
RNA
CartoonLicorice
Surface
Color
StructureStructure (with hetatm)
Chain
Chainbow
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InterfaceRNA
Protein
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Interface
show interface as licoriceCommon contacts -
| 5VAJ_B
|
5VAJ_C
|
6BSG_A
|
6BSG_R
|
Conserved?
|
|---|---|---|---|---|
| B:192 [ASP] | C:5 [C] | A:549 [ASP] | R:25 [A] | ✔ |
| B:183 [THR] | C:4 [A] | A:538 [ALA] | R:24 [C] | ✔ |
| B:134 [GLN] | C:2 [A] | A:500 [GLN] | R:22 [G] | ✔ |
| B:134 [GLN] | C:3 [C] | A:500 [GLN] | R:23 [G] | ✔ |
| B:135 [THR] | C:3 [C] | A:501 [TYR] | R:23 [G] | ✔ |
| B:133 [SER] | C:3 [C] | A:499 [SER] | R:23 [G] | ✔ |
| B:133 [SER] | C:4 [A] | A:499 [SER] | R:24 [C] | ✔ |
| B:181 [TRP] | C:4 [A] | A:536 [VAL] | R:24 [C] | ✔ |
| B:105 [ASN] | C:4 [A] | A:474 [ASN] | R:24 [C] | ✔ |
| B:105 [ASN] | C:5 [C] | A:474 [ASN] | R:25 [A] | ✔ |
| B:132 [ASN] | C:3 [C] | A:498 [ASP] | R:23 [G] | ✔ |
| B:132 [ASN] | C:4 [A] | A:498 [ASP] | R:24 [C] | ✔ |
| B:132 [ASN] | C:5 [C] | A:498 [ASP] | R:25 [A] | ✔ |
| B:180 [LYS] | C:3 [C] | A:535 [TRP] | R:23 [G] | ✔ |
| B:180 [LYS] | C:4 [A] | A:535 [TRP] | R:24 [C] | ✔ |
| B:74 [SER] | C:5 [C] | A:446 [ALA] | R:25 [A] | ✔ |
| B:106 [ASN] | C:4 [A] | A:475 [GLN] | R:24 [C] | ✔ |
| B:76 [GLY] | C:5 [C] | A:448 [ARG] | R:25 [A] | ✔ |
| B:76 [GLY] | C:6 [C] | A:448 [ARG] | R:26 [U] | ✔ |
| B:109 [GLU] | C:4 [A] | A:478 [GLU] | R:24 [C] | ✔ |
| B:183 [THR] | C:3 [C] | A:538 [ALA] | R:23 [G] | ❌ 6BSG_A_R |
| B:74 [SER] | C:6 [C] | A:446 [ALA] | R:26 [U] | ❌ 6BSG_A_R |
| B:109 [GLU] | C:5 [C] | A:478 [GLU] | R:25 [A] | ❌ 6BSG_A_R |
| B:105 [ASN] | C:3 [C] | A:474 [ASN] | R:23 [G] | ❌ 5VAJ_B_C |
| B:106 [ASN] | C:2 [A] | A:475 [GLN] | R:22 [G] | ❌ 5VAJ_B_C |
| B:106 [ASN] | C:3 [C] | A:475 [GLN] | R:23 [G] | ❌ 5VAJ_B_C |
| B:135 [THR] | C:2 [A] | A:501 [TYR] | R:22 [G] | ❌ 5VAJ_B_C |
| B:183 [THR] | C:5 [C] | A:538 [ALA] | R:25 [A] | ❌ 5VAJ_B_C |
| B:77 [ASN] | C:4 [A] | A:449 [GLU] | R:24 [C] | ❌ 6BSG_A:449 no longer at interface |
| B:77 [ASN] | C:5 [C] | A:449 [GLU] | R:25 [A] | ❌ 6BSG_A:449 no longer at interface |
| B:77 [ASN] | C:6 [C] | A:449 [GLU] | R:26 [U] | ❌ 6BSG_A:449 no longer at interface |
| B:71 [ASP] | C:4 [A] | A:443 [ASP] | R:24 [C] | ❌ 6BSG_A:443 no longer at interface |
| B:71 [ASP] | C:5 [C] | A:443 [ASP] | R:25 [A] | ❌ 6BSG_A:443 no longer at interface |
| B:73 [GLY] | C:5 [C] | A:445 [ALA] | R:25 [A] | ❌ 6BSG_A:445 no longer at interface |
| B:73 [GLY] | C:6 [C] | A:445 [ALA] | R:26 [U] | ❌ 6BSG_A:445 no longer at interface |
| B:193 [TYR] | C:6 [C] | A:550 [LYS] | R:26 [U] | ❌ 6BSG_A:550 no longer at interface |
| B:188 [GLU] | C:5 [C] | A:543 [GLY] | R:25 [A] | ❌ 6BSG_A:543 no longer at interface |
| B:189 [ILE] | C:5 [C] | A:545 [ASN] | R:25 [A] | ❌ 6BSG_A:545 no longer at interface |
| B:75 [GLN] | C:6 [C] | A:447 [SER] | R:26 [U] | ❌ 6BSG_A:447 no longer at interface |
| B:72 [VAL] | C:5 [C] | A:444 [GLY] | R:25 [A] | ❌ 6BSG_A:444 no longer at interface |
| B:72 [VAL] | C:6 [C] | A:444 [GLY] | R:26 [U] | ❌ 6BSG_A:444 no longer at interface |
| B:182 [GLN] | C:3 [C] | A:537 [PRO] | R:23 [G] | ❌ 5VAJ_B:182 no longer at interface |
| B:182 [GLN] | C:4 [A] | A:537 [PRO] | R:24 [C] | ❌ 5VAJ_B:182 no longer at interface |
| B:184 [ASP] | C:4 [A] | A:539 [HIS] | R:24 [C] | ❌ 5VAJ_B:184 no longer at interface |
| B:184 [ASP] | C:5 [C] | A:539 [HIS] | R:25 [A] | ❌ 5VAJ_B:184 no longer at interface |
Export the table of contacts
Properties of this pair
|
Common ECOD label(s) |
Common RFAM label(s) |
Interface TM-score |
Interface RMSD |
Percentage identity |
Protein TM-score |
RNA TM-score |
Protein coverage |
RNA coverage |
Percentage conservation |
Apolar conservation |
H-bond conservation |
Percentage switching out |
|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Ribonuclease H-like | 0.61 | 1.5 | 0.00 | 0.62 | 0.2 | 0.62 | 0.83 | 0.57 | 0.43 | 0.33 | 0.68 |
Other pairs involving 5VAJ_B_C or 6BSG_A_R
Total number of entries: 11
| Interface 1 | Interface 2 |
Percentage conservation |
Interface TM-score |
Interface RMSD |
Percentage identity |
Common ECOD label(s) |
Common RFAM label(s) |
Explore both interfaces |
|---|---|---|---|---|---|---|---|---|
| 5VAJ_B_C | 6VRD_A_B | 0.91 | 0.65 | 1.27 | 0.17 | Ribonuclease H-like | compare | |
| 5VAJ_B_C | 6BSG_A_R | 0.57 | 0.61 | 1.5 | 0.0 | Ribonuclease H-like | compare | |
| 1ZBI_A_C | 6BSG_A_R | 0.52 | 0.62 | 2.08 | 0.23 | Ribonuclease H-like | compare | |
| 1ZBI_A_C | 5VAJ_B_C | 0.98 | 0.95 | 0.24 | 0.17 | Ribonuclease H-like | compare | |
| 4H8K_A_C | 5VAJ_B_C | 0.92 | 0.63 | 1.53 | 0.48 | Ribonuclease H-like | compare | |
| 4H8K_A_C | 6BSG_A_R | 0.63 | 0.7 | 0.75 | 0.0 | Ribonuclease H-like | compare | |
| 1ZBL_A_C | 5VAJ_B_C | 0.97 | 0.97 | 0.36 | 0.85 | Ribonuclease H-like | compare | |
| 1ZBL_A_C | 6BSG_A_R | 0.55 | 0.61 | 2.22 | 0.0 | Ribonuclease H-like | compare | |
| 6BSG_A_R | 6VRD_A_B | 0.59 | 0.71 | 1.55 | 0.25 | Ribonuclease H-like | compare | |
| 2QKB_A_C | 5VAJ_B_C | 0.89 | 0.66 | 1.51 | 0.33 | Ribonuclease H-like | compare | |
| 2QKB_A_C | 6BSG_A_R | 0.56 | 0.7 | 1.02 | 0.0 | Ribonuclease H-like | compare |