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All interfaces > All interologs > Interface groups > group109 > 5VAJ_B_C vs 6VRD_A_B

Interface analysis


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Common contacts -

5VAJ_B
5VAJ_C
6VRD_A
6VRD_B
Conserved?
B:77 [ASN] C:4 [A] A:151 [ASN] B:14 [A] ✔
B:77 [ASN] C:5 [C] A:151 [ASN] B:15 [G] ✔
B:77 [ASN] C:6 [C] A:151 [ASN] B:16 [U] ✔
B:71 [ASP] C:5 [C] A:145 [ASP] B:15 [G] ✔
B:183 [THR] C:4 [A] A:263 [GLY] B:14 [A] ✔
B:73 [GLY] C:5 [C] A:147 [CYS] B:15 [G] ✔
B:73 [GLY] C:6 [C] A:147 [CYS] B:16 [U] ✔
B:134 [GLN] C:2 [A] A:212 [MET] B:12 [U] ✔
B:134 [GLN] C:3 [C] A:212 [MET] B:13 [G] ✔
B:135 [THR] C:3 [C] A:213 [PHE] B:13 [G] ✔
B:133 [SER] C:3 [C] A:211 [SER] B:13 [G] ✔
B:133 [SER] C:4 [A] A:211 [SER] B:14 [A] ✔
B:181 [TRP] C:4 [A] A:261 [VAL] B:14 [A] ✔
B:105 [ASN] C:4 [A] A:182 [ASN] B:14 [A] ✔
B:105 [ASN] C:5 [C] A:182 [ASN] B:15 [G] ✔
B:132 [ASN] C:3 [C] A:210 [ASN] B:13 [G] ✔
B:132 [ASN] C:4 [A] A:210 [ASN] B:14 [A] ✔
B:132 [ASN] C:5 [C] A:210 [ASN] B:15 [G] ✔
B:180 [LYS] C:3 [C] A:260 [HIS] B:13 [G] ✔
B:180 [LYS] C:4 [A] A:260 [HIS] B:14 [A] ✔
B:75 [GLN] C:6 [C] A:149 [SER] B:16 [U] ✔
B:75 [GLN] C:7 [U] A:149 [SER] B:17 [G] ✔
B:74 [SER] C:5 [C] A:148 [CYS] B:15 [G] ✔
B:74 [SER] C:6 [C] A:148 [CYS] B:16 [U] ✔
B:106 [ASN] C:4 [A] A:183 [GLN] B:14 [A] ✔
B:72 [VAL] C:5 [C] A:146 [GLY] B:15 [G] ✔
B:76 [GLY] C:6 [C] A:150 [SER] B:16 [U] ✔
B:76 [GLY] C:7 [U] A:150 [SER] B:17 [G] ✔
B:109 [GLU] C:4 [A] A:186 [GLU] B:14 [A] ✔
B:109 [GLU] C:5 [C] A:186 [GLU] B:15 [G] ✔
B:71 [ASP] C:4 [A] A:145 [ASP] B:14 [A] ❌ 6VRD_A_B
B:183 [THR] C:3 [C] A:263 [GLY] B:13 [G] ❌ 6VRD_A_B
B:74 [SER] C:7 [U] A:148 [CYS] B:17 [G] ❌ 6VRD_A_B
B:72 [VAL] C:6 [C] A:146 [GLY] B:16 [U] ❌ 6VRD_A_B
B:76 [GLY] C:5 [C] A:150 [SER] B:15 [G] ❌ 6VRD_A_B
B:75 [GLN] C:5 [C] A:149 [SER] B:15 [G] ❌ 5VAJ_B_C
B:105 [ASN] C:3 [C] A:182 [ASN] B:13 [G] ❌ 5VAJ_B_C
B:106 [ASN] C:3 [C] A:183 [GLN] B:13 [G] ❌ 5VAJ_B_C
B:192 [ASP] C:5 [C] A:274 [ASP] B:15 [G] ❌ 6VRD_A:274 no longer at interface
B:193 [TYR] C:6 [C] A:275 [ARG] B:16 [U] ❌ 6VRD_A:275 no longer at interface
B:188 [GLU] C:5 [C] A:268 [ILE] B:15 [G] ❌ 6VRD_A:268 no longer at interface
B:189 [ILE] C:5 [C] A:270 [ASN] B:15 [G] ❌ 6VRD_A:270 no longer at interface
B:138 [LYS] C:2 [A] A:216 [ASN] B:12 [U] ❌ 5VAJ_B:138 no longer at interface
B:182 [GLN] C:4 [A] A:262 [PRO] B:14 [A] ❌ 5VAJ_B:182 no longer at interface
B:194 [GLY] C:6 [C] A:278 [ARG] B:16 [U] ❌ 5VAJ_B:194 no longer at interface

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Properties of this pair

Common ECOD label(s)
 Common RFAM label(s)
 Interface TM-score
 Interface RMSD
 Percentage identity
 Protein TM-score
 RNA TM-score
 Protein coverage
 RNA coverage
 Percentage conservation
 Apolar conservation
 H-bond conservation
 Percentage switching out
Ribonuclease H-like 0.65 1.27 0.17 0.65 0.36 0.81 1.0 0.91 0.82 0.56 0.47


Other pairs involving 5VAJ_B_C or 6VRD_A_B

Total number of entries: 11

Interface 1 Interface 2 Percentage conservation
 		Interface TM-score
 		Interface RMSD
 		Percentage identity
 		Common ECOD label(s)
 		Common RFAM label(s)
 		Explore both interfaces
5VAJ_B_C 6VRD_A_B 0.91 0.65 1.27 0.17 Ribonuclease H-like compare
5VAJ_B_C 6BSG_A_R 0.57 0.61 1.5 0.0 Ribonuclease H-like compare
1ZBI_A_C 6VRD_A_B 0.92 0.65 1.28 0.27 Ribonuclease H-like compare
1ZBI_A_C 5VAJ_B_C 0.98 0.95 0.24 0.17 Ribonuclease H-like compare
4H8K_A_C 5VAJ_B_C 0.92 0.63 1.53 0.48 Ribonuclease H-like compare
4H8K_A_C 6VRD_A_B 0.94 0.76 1.42 0.17 Ribonuclease H-like compare
1ZBL_A_C 5VAJ_B_C 0.97 0.97 0.36 0.85 Ribonuclease H-like compare
1ZBL_A_C 6VRD_A_B 0.92 0.67 1.41 0.17 Ribonuclease H-like compare
6BSG_A_R 6VRD_A_B 0.59 0.71 1.55 0.25 Ribonuclease H-like compare
2QKB_A_C 5VAJ_B_C 0.89 0.66 1.51 0.33 Ribonuclease H-like compare
2QKB_A_C 6VRD_A_B 0.94 0.93 1.17 0.17 Ribonuclease H-like compare