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All interfaces > All interologs > Interface groups > group109 > 6VRD_A_B

Interface analysis

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Protein

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Licorice
Surface

RNA

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Licorice
Surface

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Chain
Chain (with hetatm)
Chainbow
Hydrophobicity
Electrostatics (surface only)
Conservation*

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Rim - Core

Contacts -

6VRD_A
6VRD_B
Distance
Base Pair
Hbond nuc:res
Base Stacking
Residue conservation
A:145 [ASP] B:15 [G] 3.78 C:6 [SC] 95.15
A:146 [GLY] B:15 [G] 3.68 C:6 [SC] 97.63
A:147 [CYS] B:15 [G] 3.7 C:6 [SC] 82.58
A:147 [CYS] B:16 [U] 3.44 C:5 [A2M] 82.58
A:148 [CYS] B:15 [G] 2.59 C:6 [SC] sugar:BB 79.65
A:148 [CYS] B:16 [U] 3.07 C:5 [A2M] 79.65
A:149 [SER] B:15 [G] 4.64 C:6 [SC] 23.65
A:149 [SER] B:16 [U] 3.8 C:5 [A2M] 23.65
A:149 [SER] B:17 [G] 3.81 C:4 [C5L] 23.65
A:150 [SER] B:16 [U] 2.96 C:5 [A2M] sugar:BB 56.96
A:150 [SER] B:17 [G] 3.79 C:4 [C5L] 56.96
A:151 [ASN] B:14 [A] 4.59 C:7 [PST] 85.95
A:151 [ASN] B:15 [G] 3.21 C:6 [SC] base:BB, base:SC 85.95
A:151 [ASN] B:16 [U] 3.31 C:5 [A2M] 85.95
A:153 [ARG] B:16 [U] 3.75 C:5 [A2M] 32.85
A:153 [ARG] B:17 [G] 3.39 C:4 [C5L] 32.85
A:182 [ASN] B:13 [G] 4.42 C:8 [SC] 90.69
A:182 [ASN] B:14 [A] 3.07 C:7 [PST] base:SC 90.69
A:182 [ASN] B:15 [G] 3.24 C:6 [SC] sugar:SC 90.69
A:183 [GLN] B:13 [G] 3.1 C:8 [SC] base:SC 83.24
A:183 [GLN] B:14 [A] 4.73 C:7 [PST] 83.24
A:186 [GLU] B:14 [A] 2.77 C:7 [PST] sugar:SC 98.75
A:186 [GLU] B:15 [G] 4.07 C:6 [SC] 98.75
A:210 [ASN] B:13 [G] 2.76 C:8 [SC] sugar:BB 95.46
A:210 [ASN] B:14 [A] 2.99 C:7 [PST] 95.46
A:210 [ASN] B:15 [G] 2.97 C:6 [SC] 95.46
A:211 [SER] B:13 [G] 3.83 C:8 [SC] 99.0
A:211 [SER] B:14 [A] 4.79 C:7 [PST] 99.0
A:212 [MET] B:12 [U] 3.89 C:9 [AS] 29.93
A:212 [MET] B:13 [G] 2.97 C:8 [SC] sugar:BB 29.93
A:213 [PHE] B:13 [G] 4.65 C:8 [SC] 72.12
A:216 [ASN] B:12 [U] 3.71 C:9 [AS] sugar:SC 67.74
A:236 [LYS] B:4 [C] 3.36 C:17 [RFJ] 50.12
A:236 [LYS] B:5 [G] 3.0 C:16 [6OO] 50.12
A:260 [HIS] B:13 [G] 3.33 C:8 [SC] 61.71
A:260 [HIS] B:14 [A] 3.67 C:7 [PST] 61.71
A:261 [VAL] B:14 [A] 4.22 C:7 [PST] 87.29
A:262 [PRO] B:14 [A] 4.95 C:7 [PST] 51.5
A:263 [GLY] B:14 [A] 4.11 C:7 [PST] 70.92
A:278 [ARG] B:16 [U] 4.76 C:5 [A2M] 61.93

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*Conservation was calculated using Rate4Site
NB: conservation is missing (completly white) for a very small minority of cases in which no homologous sequences were found (e.g. synthetic proteins 7D3J_A & 7EU9_A)

Properties of this interface

Interolog group ID Structure ID Structure description
 UniProt ID
 		ECOD label(s)
 		RFAM label(s)
 		Is ribosome? RCSB PDB link
group109 6VRD_A_B A: Ribonuclease h1, Homo sapiens (genetically engineered) B: Homo sapiens (synthetic) O60930 Ribonuclease H-like ✘

Interologs

Total number of interologs for this interface: 6

Interface 1 Interface 2 Percentage conservation
 		Interface TM-score
 		Interface RMSD
 		Percentage identity
 		Common ECOD label(s)
 		Common RFAM label(s)
 		Explore both interfaces
5VAJ_B_C 6VRD_A_B 0.91 0.65 1.27 0.17 Ribonuclease H-like compare
1ZBI_A_C 6VRD_A_B 0.92 0.65 1.28 0.27 Ribonuclease H-like compare
4H8K_A_C 6VRD_A_B 0.94 0.76 1.42 0.17 Ribonuclease H-like compare
1ZBL_A_C 6VRD_A_B 0.92 0.67 1.41 0.17 Ribonuclease H-like compare
6BSG_A_R 6VRD_A_B 0.59 0.71 1.55 0.25 Ribonuclease H-like compare
2QKB_A_C 6VRD_A_B 0.94 0.93 1.17 0.17 Ribonuclease H-like compare