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All interfaces > All interologs > Interface groups > group110 > 2HW8_A_B

Interface analysis

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Licorice
Surface

RNA

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Licorice
Surface

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Chain
Chain (with hetatm)
Chainbow
Hydrophobicity
Electrostatics (surface only)
Conservation*

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Rim - Core

Contacts -

2HW8_A
2HW8_B
Distance
Base Pair
Hbond nuc:res
Base Stacking
Residue conservation
A:2 [LYS] B:3 [G] 3.44 B:36 [C] 61.12
A:2 [LYS] B:30 [U] 3.78 B:9 [A] 61.12
A:3 [HIS] B:16 [U] 4.87 B:19 [G] 41.8
A:3 [HIS] B:30 [U] 2.7 B:9 [A] 41.8
A:3 [HIS] B:31 [U] 4.67 B:8 [A] 41.8
A:4 [GLY] B:15 [C] 3.35 B:20 [G] 69.18
A:4 [GLY] B:16 [U] 3.44 B:19 [G] 69.18
A:4 [GLY] B:30 [U] 4.95 B:9 [A] 69.18
A:5 [LYS] B:15 [C] 4.39 B:20 [G] 72.76
A:5 [LYS] B:16 [U] 3.08 B:19 [G] 72.76
A:6 [ARG] B:14 [G] 4.07 B:21 [C] 65.05
A:6 [ARG] B:15 [C] 2.92 B:20 [G] 65.05
A:6 [ARG] B:29 [C] 4.73 B:10 [G] 65.05
A:6 [ARG] B:30 [U] 4.84 B:9 [A] 65.05
A:7 [TYR] B:15 [C] 4.75 B:20 [G] 9.57
A:7 [TYR] B:30 [U] 3.3 B:9 [A] 9.57
A:7 [TYR] B:31 [U] 2.49 B:8 [A] 9.57
A:8 [ARG] B:16 [U] 4.08 B:19 [G] 31.13
A:34 [THR] B:14 [G] 4.99 B:21 [C] 46.18
A:35 [ALA] B:13 [G] 4.46 B:22 [C] 53.28
A:35 [ALA] B:14 [G] 3.26 B:21 [C] 53.28
A:36 [LYS] B:13 [G] 3.72 B:22 [C] 53.15
A:36 [LYS] B:14 [G] 2.62 B:21 [C] 53.15
A:37 [PHE] B:11 [G] 4.09 B:28 [A] 66.69
A:37 [PHE] B:12 [A] 3.82 B:23 [G] 66.69
A:37 [PHE] B:13 [G] 3.57 B:22 [C] 66.69
A:37 [PHE] B:14 [G] 4.82 B:21 [C] 66.69
A:40 [THR] B:10 [G] 3.32 B:29 [C] 82.76
A:40 [THR] B:11 [G] 2.62 B:28 [A] 82.76
A:42 [GLU] B:9 [A] 4.6 B:30 [U] 74.38
A:42 [GLU] B:10 [G] 2.57 B:29 [C] sugar:SC 74.38
A:42 [GLU] B:30 [U] 4.63 B:9 [A] 74.38
A:42 [GLU] B:31 [U] 4.27 B:8 [A] 74.38
A:44 [HIS] B:9 [A] 4.27 B:30 [U] 65.87
A:44 [HIS] B:31 [U] 2.97 B:8 [A] 65.87
A:44 [HIS] B:32 [C] 3.65 B:7 [G] 65.87
A:45 [ALA] B:32 [C] 4.27 B:7 [G] 54.91
A:46 [LYS] B:32 [C] 4.43 B:7 [G] 53.16
A:46 [LYS] B:33 [A] 2.98 B:6 [U] sugar:SC 53.16
A:46 [LYS] B:34 [C] 3.86 B:5 [G] 53.16
A:70 [LYS] B:11 [G] 3.1 B:28 [A] 75.98
A:70 [LYS] B:12 [A] 4.48 B:23 [G] 75.98
A:164 [ARG] B:8 [A] 4.29 B:31 [U] 79.71
A:166 [ASP] B:7 [G] 2.97 B:32 [C] base:SC 84.95
A:166 [ASP] B:8 [A] 3.23 B:31 [U] 84.95
A:166 [ASP] B:32 [C] 4.73 B:7 [G] 84.95
A:166 [ASP] B:33 [A] 4.95 B:6 [U] 84.95
A:167 [LYS] B:6 [U] 4.29 B:33 [A] 60.8
A:167 [LYS] B:7 [G] 3.22 B:32 [C] 60.8
A:168 [THR] B:7 [G] 4.06 B:32 [C] 1.01
A:168 [THR] B:33 [A] 2.57 B:6 [U] sugar:SC 1.01
A:168 [THR] B:34 [C] 3.53 B:5 [G] 1.01
A:169 [GLY] B:33 [A] 4.57 B:6 [U] 73.66
A:170 [ALA] B:7 [G] 4.44 B:32 [C] 42.51
A:170 [ALA] B:32 [C] 4.16 B:7 [G] 42.51
A:170 [ALA] B:33 [A] 3.92 B:6 [U] 42.51
A:172 [HIS] B:7 [G] 4.12 B:32 [C] 85.88
A:172 [HIS] B:8 [A] 3.19 B:31 [U] base:SC 85.88
A:172 [HIS] B:9 [A] 3.52 B:30 [U] 85.88
A:172 [HIS] B:31 [U] 4.58 B:8 [A] 85.88
A:172 [HIS] B:32 [C] 3.16 B:7 [G] 85.88
A:173 [ALA] B:9 [A] 3.96 B:30 [U] 42.75
A:174 [PRO] B:9 [A] 4.53 B:30 [U] 25.66
A:174 [PRO] B:10 [G] 3.75 B:29 [C] 25.66
A:177 [LYS] B:11 [G] 4.48 B:28 [A] 83.94
A:177 [LYS] B:12 [A] 4.81 B:23 [G] 83.94
A:211 [SER] B:32 [C] 4.05 B:7 [G] 34.21
A:211 [SER] B:33 [A] 2.75 B:6 [U] 34.21
A:213 [TYR] B:32 [C] 3.44 B:7 [G] 17.15
A:213 [TYR] B:33 [A] 3.59 B:6 [U] 17.15
A:215 [THR] B:30 [U] 4.19 B:9 [A] 81.99
A:215 [THR] B:31 [U] 3.46 B:8 [A] 81.99
A:216 [THR] B:10 [G] 4.98 B:29 [C] 76.25
A:216 [THR] B:30 [U] 3.71 B:9 [A] sugar:BB 76.25
A:216 [THR] B:31 [U] 4.99 B:8 [A] 76.25
A:217 [THR] B:10 [G] 2.8 B:29 [C] base:BB, sugar:SC 89.48
A:217 [THR] B:11 [G] 3.24 B:28 [A] 89.48
A:217 [THR] B:29 [C] 4.74 B:10 [G] 89.48
A:217 [THR] B:30 [U] 3.36 B:9 [A] 89.48
A:218 [MSE] B:10 [G] 3.64 B:29 [C] 84.32
A:218 [MSE] B:11 [G] 4.17 B:28 [A] 84.32
A:218 [MSE] B:13 [G] 3.46 B:22 [C] 84.32
A:218 [MSE] B:14 [G] 4.4 B:21 [C] 84.32
A:218 [MSE] B:28 [A] 3.42 B:11 [G] 84.32
A:218 [MSE] B:29 [C] 2.96 B:10 [G] 84.32
A:218 [MSE] B:30 [U] 3.55 B:9 [A] 84.32
A:219 [GLY] B:30 [U] 2.71 B:9 [A] sugar:BB 84.19
A:219 [GLY] B:31 [U] 3.28 B:8 [A] 84.19
A:220 [PRO] B:30 [U] 4.57 B:9 [A] 83.94
A:220 [PRO] B:31 [U] 3.58 B:8 [A] 83.94
A:221 [SER] B:31 [U] 3.31 B:8 [A] 78.21
A:221 [SER] B:32 [C] 2.56 B:7 [G] 78.21

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*Conservation was calculated using Rate4Site
NB: conservation is missing (completly white) for a very small minority of cases in which no homologous sequences were found (e.g. synthetic proteins 7D3J_A & 7EU9_A)

Properties of this interface

Interolog group ID Structure ID Structure description
 UniProt ID
 		ECOD label(s)
 		RFAM label(s)
 		Is ribosome? RCSB PDB link
group110 2HW8_A_B A: 50s ribosomal protein l1, Thermus thermophilus (genetically engineered) B: 36-mer P27150 Rossmann-like domain in Ribosomal protein L1 & a+b domain in Ribosomal protein L1 ✔

Interologs

Total number of interologs for this interface: 6

Interface 1 Interface 2 Percentage conservation
 		Interface TM-score
 		Interface RMSD
 		Percentage identity
 		Common ECOD label(s)
 		Common RFAM label(s)
 		Explore both interfaces
2HW8_A_B 3U4M_A_B 0.91 0.96 0.54 0.58 Rossmann-like domain in Ribosomal protein L1 & a+b domain in Ribosomal protein L1 compare
2HW8_A_B 3U56_A_B 0.91 0.95 0.83 0.58 Rossmann-like domain in Ribosomal protein L1 & a+b domain in Ribosomal protein L1 compare
2HW8_A_B 4QG3_A_B 0.93 0.95 0.85 0.58 Rossmann-like domain in Ribosomal protein L1 & a+b domain in Ribosomal protein L1 compare
2HW8_A_B 4QVI_A_B 0.93 0.94 0.79 0.53 Rossmann-like domain in Ribosomal protein L1 & a+b domain in Ribosomal protein L1 compare
2HW8_A_B 3UMY_A_B 0.91 0.9 1.11 0.63 Rossmann-like domain in Ribosomal protein L1 & a+b domain in Ribosomal protein L1 compare
2HW8_A_B 7O7Y_Bv_B5 0.72 0.76 1.79 0.17 Rossmann-like domain in Ribosomal protein L1 & a+b domain in Ribosomal protein L1 compare