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All interfaces > All interologs > Interface groups > group110 > 3U4M_A_B

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Licorice
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Licorice
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Chain
Chain (with hetatm)
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Hydrophobicity
Electrostatics (surface only)
Conservation*

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Rim - Core

Contacts -

3U4M_A
3U4M_B
Distance
Base Pair
Hbond nuc:res
Base Stacking
Residue conservation
A:1 [PRO] B:2133 [G] 4.27 B:2158 [A] 61.44
A:2 [LYS] B:2175 [C] 4.48 B:2123 [G] 64.87
A:3 [HIS] B:2175 [C] 2.64 B:2123 [G] 49.65
A:3 [HIS] B:2176 [A] 4.48 B:2122 [U] 49.65
A:4 [GLY] B:2129 [C] 3.43 B:2159 [G] 69.46
A:4 [GLY] B:2130 [U] 3.26 69.46
A:4 [GLY] B:2175 [C] 4.85 B:2123 [G] 69.46
A:5 [LYS] B:2129 [C] 4.36 B:2159 [G] 69.58
A:5 [LYS] B:2130 [U] 2.81 69.58
A:5 [LYS] B:2131 [G] 2.73 69.58
A:5 [LYS] B:2132 [U] 3.95 69.58
A:6 [ARG] B:2128 [C] 4.09 B:2160 [G] 63.09
A:6 [ARG] B:2129 [C] 2.88 B:2159 [G] 63.09
A:6 [ARG] B:2174 [C] 4.63 B:2124 [G] 63.09
A:6 [ARG] B:2175 [C] 4.87 B:2123 [G] 63.09
A:7 [TYR] B:2129 [C] 4.7 B:2159 [G] 24.04
A:7 [TYR] B:2175 [C] 3.33 B:2123 [G] 24.04
A:7 [TYR] B:2176 [A] 2.49 B:2122 [U] 24.04
A:8 [ARG] B:2130 [U] 4.37 21.99
A:8 [ARG] B:2132 [U] 2.85 base:SC 21.99
A:34 [THR] B:2128 [C] 4.97 B:2160 [G] 11.78
A:35 [ALA] B:2127 [G] 4.51 B:2161 [C] 61.5
A:35 [ALA] B:2128 [C] 3.34 B:2160 [G] 61.5
A:36 [LYS] B:2127 [G] 3.7 B:2161 [C] 54.15
A:36 [LYS] B:2128 [C] 2.72 B:2160 [G] 54.15
A:36 [LYS] B:2129 [C] 4.8 B:2159 [G] 54.15
A:37 [PHE] B:2125 [G] 4.3 B:2173 [A] 67.73
A:37 [PHE] B:2126 [A] 3.83 B:2162 [G] 67.73
A:37 [PHE] B:2127 [G] 3.6 B:2161 [C] 67.73
A:37 [PHE] B:2128 [C] 4.88 B:2160 [G] 67.73
A:40 [THR] B:2124 [G] 3.38 B:2174 [C] 81.49
A:40 [THR] B:2125 [G] 2.68 B:2173 [A] 81.49
A:42 [GLU] B:2123 [G] 3.08 B:2175 [C] base:SC 75.27
A:42 [GLU] B:2124 [G] 2.63 B:2174 [C] sugar:SC 75.27
A:42 [GLU] B:2175 [C] 4.55 B:2123 [G] 75.27
A:42 [GLU] B:2176 [A] 4.31 B:2122 [U] 75.27
A:44 [HIS] B:2123 [G] 4.08 B:2175 [C] 65.84
A:44 [HIS] B:2176 [A] 3.19 B:2122 [U] 65.84
A:44 [HIS] B:2177 [C] 3.58 B:2121 [G] 65.84
A:45 [ALA] B:2177 [C] 4.09 B:2121 [G] 54.13
A:46 [LYS] B:2177 [C] 4.11 B:2121 [G] 50.71
A:46 [LYS] B:2178 [C] 3.66 B:2120 [G] 50.71
A:46 [LYS] B:2179 [C] 4.17 B:2110 [G] 50.71
A:70 [LYS] B:2125 [G] 4.06 B:2173 [A] 80.33
A:129 [ARG] B:2169 [A] 4.22 B:2112 [G] 80.2
A:133 [PRO] B:2169 [A] 2.87 B:2112 [G] 96.32
A:133 [PRO] B:2170 [A] 3.78 B:2113 [U] 96.32
A:134 [ARG] B:2168 [G] 3.68 78.74
A:134 [ARG] B:2169 [A] 4.49 B:2112 [G] 78.74
A:134 [ARG] B:2170 [A] 2.58 B:2113 [U] 78.74
A:134 [ARG] B:2171 [A] 3.51 B:2167 [U] 78.74
A:164 [ARG] B:2122 [U] 4.49 B:2176 [A] 83.03
A:166 [ASP] B:2121 [G] 2.9 B:2177 [C] base:SC 86.85
A:166 [ASP] B:2122 [U] 3.18 B:2176 [A] 86.85
A:166 [ASP] B:2177 [C] 4.71 B:2121 [G] 86.85
A:167 [LYS] B:2120 [G] 4.53 B:2178 [C] 58.65
A:167 [LYS] B:2121 [G] 3.31 B:2177 [C] sugar:SC 58.65
A:168 [THR] B:2120 [G] 3.59 B:2178 [C] 3.08
A:168 [THR] B:2121 [G] 3.76 B:2177 [C] 3.08
A:168 [THR] B:2178 [C] 2.65 B:2120 [G] sugar:SC 3.08
A:168 [THR] B:2179 [C] 3.36 B:2110 [G] 3.08
A:169 [GLY] B:2178 [C] 4.7 B:2120 [G] 71.79
A:170 [ALA] B:2121 [G] 4.29 B:2177 [C] 41.26
A:170 [ALA] B:2177 [C] 4.08 B:2121 [G] 41.26
A:170 [ALA] B:2178 [C] 4.06 B:2120 [G] 41.26
A:172 [HIS] B:2121 [G] 3.88 B:2177 [C] 83.99
A:172 [HIS] B:2122 [U] 3.12 B:2176 [A] sugar:SC 83.99
A:172 [HIS] B:2123 [G] 3.34 B:2175 [C] base/AA stacks 83.99
A:172 [HIS] B:2176 [A] 4.47 B:2122 [U] 83.99
A:172 [HIS] B:2177 [C] 3.06 B:2121 [G] base:SC 83.99
A:173 [ALA] B:2123 [G] 3.87 B:2175 [C] 44.62
A:174 [PRO] B:2123 [G] 4.16 B:2175 [C] 30.48
A:174 [PRO] B:2124 [G] 3.85 B:2174 [C] 30.48
A:177 [LYS] B:2125 [G] 4.83 B:2173 [A] 80.65
A:210 [ARG] B:2179 [C] 4.38 B:2110 [G] 43.49
A:211 [SER] B:2177 [C] 3.65 B:2121 [G] 48.0
A:211 [SER] B:2178 [C] 2.65 B:2120 [G] 48.0
A:213 [TYR] B:2176 [A] 4.97 B:2122 [U] 24.01
A:213 [TYR] B:2177 [C] 3.34 B:2121 [G] 24.01
A:213 [TYR] B:2178 [C] 3.69 B:2120 [G] 24.01
A:215 [THR] B:2175 [C] 4.3 B:2123 [G] 80.0
A:215 [THR] B:2176 [A] 3.44 B:2122 [U] 80.0
A:216 [THR] B:2175 [C] 3.47 B:2123 [G] sugar:BB 76.7
A:217 [THR] B:2124 [G] 2.78 B:2174 [C] base:BB, sugar:SC 90.22
A:217 [THR] B:2125 [G] 3.24 B:2173 [A] 90.22
A:217 [THR] B:2174 [C] 4.97 B:2124 [G] 90.22
A:217 [THR] B:2175 [C] 3.14 B:2123 [G] 90.22
A:218 [MET] B:2124 [G] 3.61 B:2174 [C] 85.52
A:218 [MET] B:2125 [G] 3.96 B:2173 [A] 85.52
A:218 [MET] B:2127 [G] 3.45 B:2161 [C] 85.52
A:218 [MET] B:2128 [C] 4.54 B:2160 [G] 85.52
A:218 [MET] B:2173 [A] 3.4 B:2125 [G] 85.52
A:218 [MET] B:2174 [C] 3.13 B:2124 [G] 85.52
A:218 [MET] B:2175 [C] 3.6 B:2123 [G] 85.52
A:219 [GLY] B:2175 [C] 2.65 B:2123 [G] sugar:BB 82.57
A:219 [GLY] B:2176 [A] 3.18 B:2122 [U] 82.57
A:220 [PRO] B:2175 [C] 4.52 B:2123 [G] 82.89
A:220 [PRO] B:2176 [A] 3.58 B:2122 [U] 82.89
A:221 [SER] B:2176 [A] 3.18 B:2122 [U] 77.55
A:221 [SER] B:2177 [C] 2.58 B:2121 [G] 77.55

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*Conservation was calculated using Rate4Site
NB: conservation is missing (completly white) for a very small minority of cases in which no homologous sequences were found (e.g. synthetic proteins 7D3J_A & 7EU9_A)

Properties of this interface

Interolog group ID Structure ID Structure description
 UniProt ID
 		ECOD label(s)
 		RFAM label(s)
 		Is ribosome? RCSB PDB link
group110 3U4M_A_B A: 50s ribosomal protein l1, Thermus thermophilus (genetically engineered) B: RNA (80-mer), Thermus thermophilus (genetically engineered) P27150 Rossmann-like domain in Ribosomal protein L1 & a+b domain in Ribosomal protein L1 Bacterial large subunit ribosomal RNA ✔

Interologs

Total number of interologs for this interface: 6

Interface 1 Interface 2 Percentage conservation
 		Interface TM-score
 		Interface RMSD
 		Percentage identity
 		Common ECOD label(s)
 		Common RFAM label(s)
 		Explore both interfaces
3U4M_A_B 4QVI_A_B 0.96 0.96 0.81 0.93 Rossmann-like domain in Ribosomal protein L1 & a+b domain in Ribosomal protein L1 Bacterial large subunit ribosomal RNA compare
3U4M_A_B 3U56_A_B 0.98 0.97 0.5 0.96 Rossmann-like domain in Ribosomal protein L1 & a+b domain in Ribosomal protein L1 Bacterial large subunit ribosomal RNA compare
3U4M_A_B 7O7Y_Bv_B5 0.77 0.72 1.64 0.26 Rossmann-like domain in Ribosomal protein L1 & a+b domain in Ribosomal protein L1 compare
3U4M_A_B 3UMY_A_B 0.87 0.93 1.74 0.93 Rossmann-like domain in Ribosomal protein L1 & a+b domain in Ribosomal protein L1 Bacterial large subunit ribosomal RNA compare
3U4M_A_B 4QG3_A_B 0.98 0.97 0.7 0.97 Rossmann-like domain in Ribosomal protein L1 & a+b domain in Ribosomal protein L1 Bacterial large subunit ribosomal RNA compare
2HW8_A_B 3U4M_A_B 0.91 0.96 0.54 0.58 Rossmann-like domain in Ribosomal protein L1 & a+b domain in Ribosomal protein L1 compare