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All interfaces > All interologs > Interface groups > group110 > 3U56_A_B

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Licorice
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Licorice
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Chain
Chain (with hetatm)
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Hydrophobicity
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Conservation*

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Rim - Core

Contacts -

3U56_A
3U56_B
Distance
Base Pair
Hbond nuc:res
Base Stacking
Residue conservation
A:1 [PRO] B:2152 [G] 4.1 B:2139 [C] 59.73
A:2 [LYS] B:2108 [A] 3.07 B:2181 [U] 49.42
A:2 [LYS] B:2151 [G] 4.64 B:2140 [C] 49.42
A:2 [LYS] B:2175 [C] 3.92 B:2123 [G] 49.42
A:3 [HIS] B:2175 [C] 2.73 B:2123 [G] 40.83
A:3 [HIS] B:2176 [A] 4.26 B:2122 [U] 40.83
A:4 [GLY] B:2129 [C] 3.44 B:2159 [G] 65.79
A:4 [GLY] B:2130 [U] 3.39 65.79
A:4 [GLY] B:2175 [C] 4.8 B:2123 [G] 65.79
A:5 [LYS] B:2129 [C] 4.29 B:2159 [G] 74.77
A:5 [LYS] B:2130 [U] 2.88 74.77
A:5 [LYS] B:2131 [G] 3.62 74.77
A:5 [LYS] B:2132 [U] 4.69 74.77
A:6 [ARG] B:2128 [C] 4.14 B:2160 [G] 52.43
A:6 [ARG] B:2129 [C] 2.98 B:2159 [G] 52.43
A:6 [ARG] B:2130 [U] 4.84 52.43
A:6 [ARG] B:2174 [C] 4.55 B:2124 [G] 52.43
A:6 [ARG] B:2175 [C] 4.85 B:2123 [G] 52.43
A:7 [TYR] B:2129 [C] 4.72 B:2159 [G] 15.04
A:7 [TYR] B:2175 [C] 3.41 B:2123 [G] 15.04
A:7 [TYR] B:2176 [A] 2.55 B:2122 [U] 15.04
A:8 [ARG] B:2130 [U] 4.24 31.48
A:8 [ARG] B:2132 [U] 3.67 base:SC 31.48
A:35 [ALA] B:2127 [G] 4.64 B:2161 [C] 62.06
A:35 [ALA] B:2128 [C] 3.44 B:2160 [G] 62.06
A:36 [LYS] B:2127 [G] 3.59 B:2161 [C] 49.8
A:36 [LYS] B:2128 [C] 2.63 B:2160 [G] 49.8
A:37 [PHE] B:2125 [G] 4.21 B:2173 [A] 64.14
A:37 [PHE] B:2126 [A] 3.68 B:2162 [G] 64.14
A:37 [PHE] B:2127 [G] 3.47 B:2161 [C] 64.14
A:37 [PHE] B:2128 [C] 4.7 B:2160 [G] 64.14
A:40 [THR] B:2124 [G] 3.51 B:2174 [C] 82.18
A:40 [THR] B:2125 [G] 2.61 B:2173 [A] 82.18
A:42 [GLU] B:2123 [G] 2.95 B:2175 [C] base:SC 74.11
A:42 [GLU] B:2124 [G] 2.58 B:2174 [C] sugar:SC 74.11
A:42 [GLU] B:2175 [C] 4.72 B:2123 [G] 74.11
A:42 [GLU] B:2176 [A] 4.76 B:2122 [U] 74.11
A:44 [HIS] B:2123 [G] 3.83 B:2175 [C] 64.13
A:44 [HIS] B:2176 [A] 3.11 B:2122 [U] 64.13
A:44 [HIS] B:2177 [C] 3.4 B:2121 [G] 64.13
A:45 [ALA] B:2177 [C] 3.88 B:2121 [G] 56.93
A:46 [LYS] B:2177 [C] 3.97 B:2121 [G] 47.91
A:46 [LYS] B:2178 [C] 2.97 B:2120 [G] sugar:SC 47.91
A:46 [LYS] B:2179 [C] 3.76 B:2110 [G] 47.91
A:70 [LYS] B:2125 [G] 3.67 B:2173 [A] 78.06
A:70 [LYS] B:2126 [A] 3.77 B:2162 [G] 78.06
A:129 [ARG] B:2169 [A] 4.39 B:2112 [G] 80.16
A:133 [PRO] B:2122 [U] 4.88 B:2176 [A] 96.67
A:133 [PRO] B:2169 [A] 3.32 B:2112 [G] 96.67
A:133 [PRO] B:2170 [A] 4.23 B:2113 [U] 96.67
A:134 [ARG] B:2168 [G] 3.43 81.03
A:134 [ARG] B:2169 [A] 4.35 B:2112 [G] 81.03
A:134 [ARG] B:2170 [A] 2.81 B:2113 [U] 81.03
A:134 [ARG] B:2171 [A] 2.96 B:2167 [U] 81.03
A:164 [ARG] B:2122 [U] 4.21 B:2176 [A] 84.64
A:166 [ASP] B:2121 [G] 2.85 B:2177 [C] base:SC 85.84
A:166 [ASP] B:2122 [U] 3.19 B:2176 [A] 85.84
A:166 [ASP] B:2177 [C] 4.65 B:2121 [G] 85.84
A:166 [ASP] B:2178 [C] 4.93 B:2120 [G] 85.84
A:167 [LYS] B:2120 [G] 4.18 B:2178 [C] 58.6
A:167 [LYS] B:2121 [G] 3.2 B:2177 [C] sugar:BB 58.6
A:168 [THR] B:2120 [G] 3.55 B:2178 [C] 6.68
A:168 [THR] B:2121 [G] 3.79 B:2177 [C] 6.68
A:168 [THR] B:2178 [C] 2.47 B:2120 [G] sugar:SC 6.68
A:168 [THR] B:2179 [C] 3.24 B:2110 [G] 6.68
A:169 [GLY] B:2178 [C] 4.61 B:2120 [G] 69.47
A:170 [ALA] B:2121 [G] 3.99 B:2177 [C] 51.8
A:170 [ALA] B:2177 [C] 3.97 B:2121 [G] 51.8
A:170 [ALA] B:2178 [C] 3.88 B:2120 [G] 51.8
A:172 [HIS] B:2121 [G] 3.72 B:2177 [C] 84.64
A:172 [HIS] B:2122 [U] 2.77 B:2176 [A] sugar:SC 84.64
A:172 [HIS] B:2123 [G] 3.32 B:2175 [C] base/AA stacks 84.64
A:172 [HIS] B:2176 [A] 4.3 B:2122 [U] 84.64
A:172 [HIS] B:2177 [C] 3.06 B:2121 [G] base:SC 84.64
A:173 [ALA] B:2123 [G] 3.75 B:2175 [C] 38.83
A:174 [PRO] B:2123 [G] 4.12 B:2175 [C] 33.83
A:174 [PRO] B:2124 [G] 3.82 B:2174 [C] 33.83
A:177 [LYS] B:2125 [G] 4.9 B:2173 [A] 80.98
A:210 [ARG] B:2179 [C] 4.6 B:2110 [G] 38.46
A:211 [SER] B:2177 [C] 3.61 B:2121 [G] 45.49
A:211 [SER] B:2178 [C] 2.59 B:2120 [G] 45.49
A:213 [TYR] B:2176 [A] 4.78 B:2122 [U] 13.46
A:213 [TYR] B:2177 [C] 3.28 B:2121 [G] 13.46
A:213 [TYR] B:2178 [C] 3.37 B:2120 [G] 13.46
A:215 [THR] B:2175 [C] 4.27 B:2123 [G] 81.27
A:215 [THR] B:2176 [A] 3.61 B:2122 [U] 81.27
A:216 [THR] B:2175 [C] 3.7 B:2123 [G] sugar:BB 78.43
A:217 [VAL] B:2124 [G] 3.05 B:2174 [C] base:BB 87.91
A:217 [VAL] B:2125 [G] 3.49 B:2173 [A] 87.91
A:217 [VAL] B:2174 [C] 4.69 B:2124 [G] 87.91
A:217 [VAL] B:2175 [C] 3.09 B:2123 [G] 87.91
A:218 [MET] B:2124 [G] 4.02 B:2174 [C] 82.51
A:218 [MET] B:2125 [G] 4.04 B:2173 [A] 82.51
A:218 [MET] B:2127 [G] 3.44 B:2161 [C] 82.51
A:218 [MET] B:2128 [C] 4.34 B:2160 [G] 82.51
A:218 [MET] B:2173 [A] 3.59 B:2125 [G] 82.51
A:218 [MET] B:2174 [C] 3.12 B:2124 [G] 82.51
A:218 [MET] B:2175 [C] 3.67 B:2123 [G] 82.51
A:219 [GLY] B:2175 [C] 2.61 B:2123 [G] sugar:BB 83.76
A:219 [GLY] B:2176 [A] 3.22 B:2122 [U] 83.76
A:220 [PRO] B:2175 [C] 4.47 B:2123 [G] 76.66
A:220 [PRO] B:2176 [A] 3.61 B:2122 [U] 76.66
A:221 [SER] B:2176 [A] 3.14 B:2122 [U] 77.98
A:221 [SER] B:2177 [C] 2.63 B:2121 [G] 77.98

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*Conservation was calculated using Rate4Site
NB: conservation is missing (completly white) for a very small minority of cases in which no homologous sequences were found (e.g. synthetic proteins 7D3J_A & 7EU9_A)

Properties of this interface

Interolog group ID Structure ID Structure description
 UniProt ID
 		ECOD label(s)
 		RFAM label(s)
 		Is ribosome? RCSB PDB link
group110 3U56_A_B A: 50s ribosomal protein l1, Thermus thermophilus (genetically engineered) B: RNA (80-mer), Thermus thermophilus (genetically engineered) P27150 Rossmann-like domain in Ribosomal protein L1 & a+b domain in Ribosomal protein L1 Bacterial large subunit ribosomal RNA ✔

Interologs

Total number of interologs for this interface: 6

Interface 1 Interface 2 Percentage conservation
 		Interface TM-score
 		Interface RMSD
 		Percentage identity
 		Common ECOD label(s)
 		Common RFAM label(s)
 		Explore both interfaces
2HW8_A_B 3U56_A_B 0.91 0.95 0.83 0.58 Rossmann-like domain in Ribosomal protein L1 & a+b domain in Ribosomal protein L1 compare
3U4M_A_B 3U56_A_B 0.98 0.97 0.5 0.96 Rossmann-like domain in Ribosomal protein L1 & a+b domain in Ribosomal protein L1 Bacterial large subunit ribosomal RNA compare
3U56_A_B 4QG3_A_B 0.98 0.98 0.75 0.95 Rossmann-like domain in Ribosomal protein L1 & a+b domain in Ribosomal protein L1 Bacterial large subunit ribosomal RNA compare
3U56_A_B 3UMY_A_B 0.90 0.96 1.45 0.95 Rossmann-like domain in Ribosomal protein L1 & a+b domain in Ribosomal protein L1 Bacterial large subunit ribosomal RNA compare
3U56_A_B 7O7Y_Bv_B5 0.73 0.72 1.94 0.21 Rossmann-like domain in Ribosomal protein L1 & a+b domain in Ribosomal protein L1 compare
3U56_A_B 4QVI_A_B 0.96 0.97 0.76 0.9 Rossmann-like domain in Ribosomal protein L1 & a+b domain in Ribosomal protein L1 Bacterial large subunit ribosomal RNA compare