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All interfaces > All interologs > Interface groups > group110 > 3U56_A_B vs 7O7Y_Bv_B5

Interface analysis


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Common contacts -

3U56_A
3U56_B
7O7Y_Bv
7O7Y_B5
Conserved?
A:170 [ALA] B:2121 [G] Bv:164 [CYS] B5:3699 [G] ✔
A:170 [ALA] B:2177 [C] Bv:164 [CYS] B5:3782 [C] ✔
A:170 [ALA] B:2178 [C] Bv:164 [CYS] B5:3783 [U] ✔
A:37 [PHE] B:2125 [G] Bv:28 [PHE] B5:3703 [G] ✔
A:37 [PHE] B:2126 [A] Bv:28 [PHE] B5:3704 [A] ✔
A:37 [PHE] B:2127 [G] Bv:28 [PHE] B5:3705 [G] ✔
A:37 [PHE] B:2128 [C] Bv:28 [PHE] B5:3706 [G] ✔
A:42 [GLU] B:2123 [G] Bv:33 [GLU] B5:3701 [G] ✔
A:42 [GLU] B:2124 [G] Bv:33 [GLU] B5:3702 [G] ✔
A:42 [GLU] B:2175 [C] Bv:33 [GLU] B5:3780 [C] ✔
A:221 [SER] B:2176 [A] Bv:213 [PRO] B5:3781 [A] ✔
A:221 [SER] B:2177 [C] Bv:213 [PRO] B5:3782 [C] ✔
A:36 [LYS] B:2128 [C] Bv:26 [ARG] B5:3706 [G] ✔
A:210 [ARG] B:2179 [C] Bv:202 [ARG] B5:3784 [A] ✔
A:216 [THR] B:2175 [C] Bv:208 [SER] B5:3780 [C] ✔
A:211 [SER] B:2177 [C] Bv:203 [ALA] B5:3782 [C] ✔
A:211 [SER] B:2178 [C] Bv:203 [ALA] B5:3783 [U] ✔
A:220 [PRO] B:2176 [A] Bv:212 [LYS] B5:3781 [A] ✔
A:169 [GLY] B:2178 [C] Bv:163 [LEU] B5:3783 [U] ✔
A:40 [THR] B:2124 [G] Bv:31 [THR] B5:3702 [G] ✔
A:40 [THR] B:2125 [G] Bv:31 [THR] B5:3703 [G] ✔
A:217 [VAL] B:2124 [G] Bv:209 [THR] B5:3702 [G] ✔
A:217 [VAL] B:2125 [G] Bv:209 [THR] B5:3703 [G] ✔
A:217 [VAL] B:2175 [C] Bv:209 [THR] B5:3780 [C] ✔
A:213 [TYR] B:2176 [A] Bv:205 [TYR] B5:3781 [A] ✔
A:213 [TYR] B:2177 [C] Bv:205 [TYR] B5:3782 [C] ✔
A:213 [TYR] B:2178 [C] Bv:205 [TYR] B5:3783 [U] ✔
A:219 [GLY] B:2175 [C] Bv:211 [GLY] B5:3780 [C] ✔
A:219 [GLY] B:2176 [A] Bv:211 [GLY] B5:3781 [A] ✔
A:166 [ASP] B:2121 [G] Bv:160 [LYS] B5:3699 [G] ✔
A:166 [ASP] B:2122 [U] Bv:160 [LYS] B5:3700 [U] ✔
A:168 [THR] B:2121 [G] Bv:162 [VAL] B5:3699 [G] ✔
A:168 [THR] B:2178 [C] Bv:162 [VAL] B5:3783 [U] ✔
A:35 [ALA] B:2127 [G] Bv:25 [ARG] B5:3705 [G] ✔
A:35 [ALA] B:2128 [C] Bv:25 [ARG] B5:3706 [G] ✔
A:45 [ALA] B:2177 [C] Bv:36 [ILE] B5:3782 [C] ✔
A:174 [PRO] B:2123 [G] Bv:168 [ALA] B5:3701 [G] ✔
A:174 [PRO] B:2124 [G] Bv:168 [ALA] B5:3702 [G] ✔
A:167 [LYS] B:2121 [G] Bv:161 [LYS] B5:3699 [G] ✔
A:173 [ALA] B:2123 [G] Bv:167 [VAL] B5:3701 [G] ✔
A:215 [THR] B:2175 [C] Bv:207 [LYS] B5:3780 [C] ✔
A:215 [THR] B:2176 [A] Bv:207 [LYS] B5:3781 [A] ✔
A:172 [HIS] B:2122 [U] Bv:166 [ALA] B5:3700 [U] ✔
A:172 [HIS] B:2123 [G] Bv:166 [ALA] B5:3701 [G] ✔
A:218 [MET] B:2124 [G] Bv:210 [MET] B5:3702 [G] ✔
A:218 [MET] B:2128 [C] Bv:210 [MET] B5:3706 [G] ✔
A:218 [MET] B:2174 [C] Bv:210 [MET] B5:3779 [C] ✔
A:218 [MET] B:2175 [C] Bv:210 [MET] B5:3780 [C] ✔
A:46 [LYS] B:2177 [C] Bv:37 [SER] B5:3782 [C] ✔
A:46 [LYS] B:2178 [C] Bv:37 [SER] B5:3783 [U] ✔
A:177 [LYS] B:2125 [G] Bv:171 [HIS] B5:3703 [G] ✔
A:44 [HIS] B:2123 [G] Bv:35 [GLN] B5:3701 [G] ✔
A:44 [HIS] B:2176 [A] Bv:35 [GLN] B5:3781 [A] ✔
A:44 [HIS] B:2177 [C] Bv:35 [GLN] B5:3782 [C] ✔
A:164 [ARG] B:2122 [U] Bv:158 [GLN] B5:3700 [U] ❌ 7O7Y_Bv_B5
A:42 [GLU] B:2176 [A] Bv:33 [GLU] B5:3781 [A] ❌ 7O7Y_Bv_B5
A:36 [LYS] B:2127 [G] Bv:26 [ARG] B5:3705 [G] ❌ 7O7Y_Bv_B5
A:220 [PRO] B:2175 [C] Bv:212 [LYS] B5:3780 [C] ❌ 7O7Y_Bv_B5
A:217 [VAL] B:2174 [C] Bv:209 [THR] B5:3779 [C] ❌ 7O7Y_Bv_B5
A:166 [ASP] B:2177 [C] Bv:160 [LYS] B5:3782 [C] ❌ 7O7Y_Bv_B5
A:166 [ASP] B:2178 [C] Bv:160 [LYS] B5:3783 [U] ❌ 7O7Y_Bv_B5
A:168 [THR] B:2179 [C] Bv:162 [VAL] B5:3784 [A] ❌ 7O7Y_Bv_B5
A:172 [HIS] B:2121 [G] Bv:166 [ALA] B5:3699 [G] ❌ 7O7Y_Bv_B5
A:172 [HIS] B:2176 [A] Bv:166 [ALA] B5:3781 [A] ❌ 7O7Y_Bv_B5
A:172 [HIS] B:2177 [C] Bv:166 [ALA] B5:3782 [C] ❌ 7O7Y_Bv_B5
A:218 [MET] B:2125 [G] Bv:210 [MET] B5:3703 [G] ❌ 7O7Y_Bv_B5
A:218 [MET] B:2127 [G] Bv:210 [MET] B5:3705 [G] ❌ 7O7Y_Bv_B5
A:46 [LYS] B:2179 [C] Bv:37 [SER] B5:3784 [A] ❌ 7O7Y_Bv_B5
A:164 [ARG] B:2123 [G] Bv:158 [GLN] B5:3701 [G] ❌ 3U56_A_B
A:168 [THR] B:2122 [U] Bv:162 [VAL] B5:3700 [U] ❌ 3U56_A_B
A:170 [ALA] B:2122 [U] Bv:164 [CYS] B5:3700 [U] ❌ 3U56_A_B
A:210 [ARG] B:2178 [C] Bv:202 [ARG] B5:3783 [U] ❌ 3U56_A_B
A:215 [THR] B:2123 [G] Bv:207 [LYS] B5:3701 [G] ❌ 3U56_A_B
A:35 [ALA] B:2129 [C] Bv:25 [ARG] B5:3707 [C] ❌ 3U56_A_B
A:134 [ARG] B:2169 [A] Bv:131 [ALA] B5:3774 [A] ❌ 7O7Y_Bv:131, 7O7Y_B5:3774 no longer at interface
A:168 [THR] B:2120 [G] Bv:162 [VAL] B5:3698 [A] ❌ 7O7Y_B5:3698 no longer at interface
A:167 [LYS] B:2120 [G] Bv:161 [LYS] B5:3698 [A] ❌ 7O7Y_B5:3698 no longer at interface
A:133 [PRO] B:2169 [A] Bv:130 [LYS] B5:3774 [A] ❌ 7O7Y_Bv:130, 7O7Y_B5:3774 no longer at interface
A:218 [MET] B:2173 [A] Bv:210 [MET] B5:3778 [A] ❌ 7O7Y_B5:3778 no longer at interface
A:129 [ARG] B:2169 [A] Bv:126 [PRO] B5:3774 [A] ❌ 7O7Y_Bv:126, 7O7Y_B5:3774 no longer at interface
A:109 [ASP] B:2164 [C] Bv:106 [LYS] B5:3769 [C] ❌ 3U56_A:109, 3U56_B:2164 no longer at interface
A:106 [GLY] B:2165 [G] Bv:98 [LYS] B5:3770 [G] ❌ 3U56_A:106, 3U56_B:2165 no longer at interface
A:106 [GLY] B:2167 [U] Bv:98 [LYS] B5:3772 [U] ❌ 3U56_A:106, 3U56_B:2167 no longer at interface
A:106 [GLY] B:2166 [G] Bv:98 [LYS] B5:3771 [G] ❌ 3U56_A:106, 3U56_B:2166 no longer at interface
A:134 [ARG] B:2168 [G] Bv:131 [ALA] B5:3773 [G] ❌ 7O7Y_Bv:131 no longer at interface
A:134 [ARG] B:2170 [A] Bv:131 [ALA] B5:3775 [A] ❌ 7O7Y_Bv:131 no longer at interface
A:134 [ARG] B:2171 [A] Bv:131 [ALA] B5:3776 [A] ❌ 7O7Y_Bv:131 no longer at interface
A:133 [PRO] B:2122 [U] Bv:130 [LYS] B5:3700 [U] ❌ 7O7Y_Bv:130 no longer at interface
A:133 [PRO] B:2170 [A] Bv:130 [LYS] B5:3775 [A] ❌ 7O7Y_Bv:130 no longer at interface
A:70 [LYS] B:2125 [G] Bv:61 [PRO] B5:3703 [G] ❌ 7O7Y_Bv:61 no longer at interface
A:70 [LYS] B:2126 [A] Bv:61 [PRO] B5:3704 [A] ❌ 7O7Y_Bv:61 no longer at interface
A:171 [ILE] B:2122 [U] Bv:165 [LEU] B5:3700 [U] ❌ 3U56_A:171 no longer at interface
A:34 [THR] B:2175 [C] Bv:24 [LYS] B5:3780 [C] ❌ 3U56_A:34 no longer at interface
A:106 [GLY] B:2168 [G] Bv:98 [LYS] B5:3773 [G] ❌ 3U56_A:106 no longer at interface

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Properties of this pair

Common ECOD label(s)
 Common RFAM label(s)
 Interface TM-score
 Interface RMSD
 Percentage identity
 Protein TM-score
 RNA TM-score
 Protein coverage
 RNA coverage
 Percentage conservation
 Apolar conservation
 H-bond conservation
 Percentage switching out
Rossmann-like domain in Ribosomal protein L1 & a+b domain in Ribosomal protein L1 0.72 1.94 0.21 0.76 0.57 0.72 0.67 0.73 0.56 0.12 0.50


Other pairs involving 3U56_A_B or 7O7Y_Bv_B5

Total number of entries: 11

Interface 1 Interface 2 Percentage conservation
 		Interface TM-score
 		Interface RMSD
 		Percentage identity
 		Common ECOD label(s)
 		Common RFAM label(s)
 		Explore both interfaces
3U4M_A_B 3U56_A_B 0.98 0.97 0.5 0.96 Rossmann-like domain in Ribosomal protein L1 & a+b domain in Ribosomal protein L1 Bacterial large subunit ribosomal RNA compare
2HW8_A_B 3U56_A_B 0.91 0.95 0.83 0.58 Rossmann-like domain in Ribosomal protein L1 & a+b domain in Ribosomal protein L1 compare
3U56_A_B 3UMY_A_B 0.90 0.96 1.45 0.95 Rossmann-like domain in Ribosomal protein L1 & a+b domain in Ribosomal protein L1 Bacterial large subunit ribosomal RNA compare
3U56_A_B 4QG3_A_B 0.98 0.98 0.75 0.95 Rossmann-like domain in Ribosomal protein L1 & a+b domain in Ribosomal protein L1 Bacterial large subunit ribosomal RNA compare
3U56_A_B 4QVI_A_B 0.96 0.97 0.76 0.9 Rossmann-like domain in Ribosomal protein L1 & a+b domain in Ribosomal protein L1 Bacterial large subunit ribosomal RNA compare
4QG3_A_B 7O7Y_Bv_B5 0.75 0.75 1.4 0.21 Rossmann-like domain in Ribosomal protein L1 & a+b domain in Ribosomal protein L1 compare
3U4M_A_B 7O7Y_Bv_B5 0.77 0.72 1.64 0.26 Rossmann-like domain in Ribosomal protein L1 & a+b domain in Ribosomal protein L1 compare
3UMY_A_B 7O7Y_Bv_B5 0.61 0.71 2.01 0.15 Rossmann-like domain in Ribosomal protein L1 & a+b domain in Ribosomal protein L1 compare
4QVI_A_B 7O7Y_Bv_B5 0.76 0.75 1.38 0.21 Rossmann-like domain in Ribosomal protein L1 & a+b domain in Ribosomal protein L1 compare
2HW8_A_B 7O7Y_Bv_B5 0.72 0.76 1.79 0.17 Rossmann-like domain in Ribosomal protein L1 & a+b domain in Ribosomal protein L1 compare
3U56_A_B 7O7Y_Bv_B5 0.73 0.72 1.94 0.21 Rossmann-like domain in Ribosomal protein L1 & a+b domain in Ribosomal protein L1 compare