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All interfaces > All interologs > Interface groups > group110 > 3UMY_A_B

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Chain
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Conservation*

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Rim - Core

Contacts -

3UMY_A
3UMY_B
Distance
Base Pair
Hbond nuc:res
Base Stacking
Residue conservation
A:1 [PRO] B:2152 [G] 4.52 B:2139 [C] 36.55
A:2 [LYS] B:2107 [G] 4.03 B:2182 [C] 41.63
A:2 [LYS] B:2108 [A] 2.71 B:2181 [U] 41.63
A:2 [LYS] B:2150 [U] 4.73 B:2141 [G] 41.63
A:2 [LYS] B:2151 [G] 3.46 B:2140 [C] 41.63
A:2 [LYS] B:2175 [C] 3.9 B:2123 [G] 41.63
A:3 [HIS] B:2175 [C] 2.58 B:2123 [G] 54.41
A:3 [HIS] B:2176 [A] 4.56 B:2122 [U] 54.41
A:4 [GLY] B:2129 [C] 3.42 B:2159 [G] 71.2
A:4 [GLY] B:2130 [U] 3.4 71.2
A:4 [GLY] B:2175 [C] 4.68 B:2123 [G] 71.2
A:5 [LYS] B:2129 [C] 4.41 B:2159 [G] 74.03
A:5 [LYS] B:2130 [U] 2.95 74.03
A:5 [LYS] B:2131 [G] 3.79 74.03
A:5 [LYS] B:2132 [U] 3.92 74.03
A:6 [ARG] B:2128 [C] 4.24 B:2160 [G] 57.1
A:6 [ARG] B:2129 [C] 2.9 B:2159 [G] 57.1
A:6 [ARG] B:2130 [U] 4.97 57.1
A:6 [ARG] B:2174 [C] 4.36 B:2124 [G] 57.1
A:6 [ARG] B:2175 [C] 4.84 B:2123 [G] 57.1
A:7 [TYR] B:2129 [C] 4.59 B:2159 [G] 29.21
A:7 [TYR] B:2175 [C] 3.28 B:2123 [G] 29.21
A:7 [TYR] B:2176 [A] 2.44 B:2122 [U] 29.21
A:8 [ARG] B:2130 [U] 4.42 24.87
A:8 [ARG] B:2132 [U] 2.84 base:SC 24.87
A:35 [ALA] B:2127 [G] 4.75 B:2161 [C] 52.67
A:35 [ALA] B:2128 [C] 3.59 B:2160 [G] 52.67
A:36 [LYS] B:2127 [G] 3.72 B:2161 [C] 53.18
A:36 [LYS] B:2128 [C] 2.7 B:2160 [G] 53.18
A:37 [PHE] B:2125 [G] 3.95 B:2173 [A] 61.15
A:37 [PHE] B:2126 [A] 3.46 B:2162 [G] 61.15
A:37 [PHE] B:2127 [G] 3.62 B:2161 [C] 61.15
A:37 [PHE] B:2128 [C] 4.69 B:2160 [G] 61.15
A:38 [ASP] B:2126 [A] 4.91 B:2162 [G] 57.97
A:40 [THR] B:2124 [G] 3.41 B:2174 [C] 79.57
A:40 [THR] B:2125 [G] 2.56 B:2173 [A] 79.57
A:40 [THR] B:2126 [A] 4.78 B:2162 [G] 79.57
A:42 [GLU] B:2123 [G] 3.0 B:2175 [C] base:SC 74.05
A:42 [GLU] B:2124 [G] 2.75 B:2174 [C] sugar:SC 74.05
A:42 [GLU] B:2175 [C] 4.33 B:2123 [G] 74.05
A:42 [GLU] B:2176 [A] 4.23 B:2122 [U] 74.05
A:44 [HIS] B:2123 [G] 4.07 B:2175 [C] 67.64
A:44 [HIS] B:2176 [A] 3.15 B:2122 [U] 67.64
A:44 [HIS] B:2177 [C] 3.43 B:2121 [G] 67.64
A:45 [ALA] B:2177 [C] 4.03 B:2121 [G] 55.21
A:46 [LYS] B:2177 [C] 4.05 B:2121 [G] 55.98
A:46 [LYS] B:2178 [C] 3.04 B:2120 [G] 55.98
A:46 [LYS] B:2179 [C] 4.38 B:2110 [G] 55.98
A:70 [LYS] B:2125 [G] 4.12 B:2173 [A] 76.18
A:103 [ILE] B:2170 [A] 4.79 B:2113 [U] 84.56
A:106 [GLY] B:2168 [G] 4.53 71.39
A:106 [GLY] B:2170 [A] 4.65 B:2113 [U] 71.39
A:108 [MET] B:2170 [A] 4.06 B:2113 [U] 44.15
A:108 [MET] B:2171 [A] 4.25 B:2167 [U] 44.15
A:129 [ARG] B:2112 [G] 4.81 B:2169 [A] 81.11
A:129 [ARG] B:2169 [A] 3.38 B:2112 [G] base/AA stacks 81.11
A:130 [ILE] B:2169 [A] 3.51 B:2112 [G] 73.14
A:130 [ILE] B:2170 [A] 3.8 B:2113 [U] 73.14
A:133 [PRO] B:2122 [U] 4.98 B:2176 [A] 94.58
A:134 [ARG] B:2122 [U] 4.17 B:2176 [A] 75.49
A:134 [ARG] B:2123 [G] 3.2 B:2175 [C] 75.49
A:134 [ARG] B:2170 [A] 4.6 B:2113 [U] 75.49
A:134 [ARG] B:2171 [A] 4.82 B:2167 [U] 75.49
A:136 [LEU] B:2123 [G] 4.56 B:2175 [C] 91.7
A:164 [ARG] B:2122 [U] 4.57 B:2176 [A] 80.78
A:166 [ASP] B:2121 [G] 2.79 B:2177 [C] base:SC 83.79
A:166 [ASP] B:2122 [U] 3.27 B:2176 [A] 83.79
A:166 [ASP] B:2177 [C] 4.56 B:2121 [G] 83.79
A:166 [ASP] B:2178 [C] 4.9 B:2120 [G] 83.79
A:167 [LYS] B:2120 [G] 4.52 B:2178 [C] 59.09
A:167 [LYS] B:2121 [G] 3.19 B:2177 [C] sugar:BB 59.09
A:168 [THR] B:2120 [G] 3.73 B:2178 [C] 11.04
A:168 [THR] B:2121 [G] 3.7 B:2177 [C] 11.04
A:168 [THR] B:2178 [C] 2.57 B:2120 [G] sugar:SC 11.04
A:168 [THR] B:2179 [C] 3.53 B:2110 [G] 11.04
A:169 [GLY] B:2178 [C] 4.64 B:2120 [G] 70.9
A:170 [ALA] B:2121 [G] 4.25 B:2177 [C] 44.95
A:170 [ALA] B:2177 [C] 3.97 B:2121 [G] 44.95
A:170 [ALA] B:2178 [C] 4.19 B:2120 [G] 44.95
A:172 [HIS] B:2121 [G] 3.87 B:2177 [C] 84.75
A:172 [HIS] B:2122 [U] 2.92 B:2176 [A] base:SC 84.75
A:172 [HIS] B:2123 [G] 3.26 B:2175 [C] base/AA stacks 84.75
A:172 [HIS] B:2176 [A] 4.35 B:2122 [U] 84.75
A:172 [HIS] B:2177 [C] 2.98 B:2121 [G] 84.75
A:173 [ALA] B:2123 [G] 3.79 B:2175 [C] 45.32
A:173 [ALA] B:2124 [G] 4.96 B:2174 [C] 45.32
A:174 [PRO] B:2123 [G] 4.13 B:2175 [C] 33.12
A:174 [PRO] B:2124 [G] 3.6 B:2174 [C] 33.12
A:177 [LYS] B:2125 [G] 3.76 B:2173 [A] 82.27
A:177 [LYS] B:2126 [A] 3.73 B:2162 [G] 82.27
A:211 [SER] B:2177 [C] 3.75 B:2121 [G] 39.21
A:211 [SER] B:2178 [C] 2.73 B:2120 [G] 39.21
A:213 [TYR] B:2176 [A] 4.86 B:2122 [U] 11.27
A:213 [TYR] B:2177 [C] 3.46 B:2121 [G] 11.27
A:213 [TYR] B:2178 [C] 3.82 B:2120 [G] 11.27
A:215 [THR] B:2175 [C] 4.12 B:2123 [G] 76.17
A:215 [THR] B:2176 [A] 3.32 B:2122 [U] 76.17
A:216 [THR] B:2175 [C] 3.46 B:2123 [G] sugar:BB 78.47
A:217 [ALA] B:2124 [G] 2.97 B:2174 [C] base:BB 86.69
A:217 [ALA] B:2125 [G] 4.03 B:2173 [A] 86.69
A:217 [ALA] B:2174 [C] 4.6 B:2124 [G] 86.69
A:217 [ALA] B:2175 [C] 3.23 B:2123 [G] 86.69
A:218 [MET] B:2124 [G] 4.16 B:2174 [C] 80.37
A:218 [MET] B:2125 [G] 3.37 B:2173 [A] 80.37
A:218 [MET] B:2127 [G] 3.32 B:2161 [C] 80.37
A:218 [MET] B:2128 [C] 3.65 B:2160 [G] 80.37
A:218 [MET] B:2173 [A] 3.25 B:2125 [G] 80.37
A:218 [MET] B:2174 [C] 3.29 B:2124 [G] 80.37
A:218 [MET] B:2175 [C] 3.6 B:2123 [G] 80.37
A:219 [GLY] B:2175 [C] 2.73 B:2123 [G] sugar:BB 85.85
A:219 [GLY] B:2176 [A] 3.32 B:2122 [U] 85.85
A:220 [PRO] B:2175 [C] 4.54 B:2123 [G] 79.56
A:220 [PRO] B:2176 [A] 3.53 B:2122 [U] 79.56
A:221 [SER] B:2176 [A] 3.26 B:2122 [U] 73.75
A:221 [SER] B:2177 [C] 2.67 B:2121 [G] 73.75

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*Conservation was calculated using Rate4Site
NB: conservation is missing (completly white) for a very small minority of cases in which no homologous sequences were found (e.g. synthetic proteins 7D3J_A & 7EU9_A)

Properties of this interface

Interolog group ID Structure ID Structure description
 UniProt ID
 		ECOD label(s)
 		RFAM label(s)
 		Is ribosome? RCSB PDB link
group110 3UMY_A_B A: 50s ribosomal protein l1, Thermus thermophilus (genetically engineered) B: RNA (80-mer), Thermus thermophilus (genetically engineered) P27150 Rossmann-like domain in Ribosomal protein L1 & a+b domain in Ribosomal protein L1 Bacterial large subunit ribosomal RNA ✔

Interologs

Total number of interologs for this interface: 6

Interface 1 Interface 2 Percentage conservation
 		Interface TM-score
 		Interface RMSD
 		Percentage identity
 		Common ECOD label(s)
 		Common RFAM label(s)
 		Explore both interfaces
3U4M_A_B 3UMY_A_B 0.87 0.93 1.74 0.93 Rossmann-like domain in Ribosomal protein L1 & a+b domain in Ribosomal protein L1 Bacterial large subunit ribosomal RNA compare
3UMY_A_B 4QVI_A_B 0.84 0.93 1.61 0.89 Rossmann-like domain in Ribosomal protein L1 & a+b domain in Ribosomal protein L1 Bacterial large subunit ribosomal RNA compare
3UMY_A_B 4QG3_A_B 0.83 0.93 1.66 0.95 Rossmann-like domain in Ribosomal protein L1 & a+b domain in Ribosomal protein L1 Bacterial large subunit ribosomal RNA compare
3UMY_A_B 7O7Y_Bv_B5 0.61 0.71 2.01 0.15 Rossmann-like domain in Ribosomal protein L1 & a+b domain in Ribosomal protein L1 compare
2HW8_A_B 3UMY_A_B 0.91 0.9 1.11 0.63 Rossmann-like domain in Ribosomal protein L1 & a+b domain in Ribosomal protein L1 compare
3U56_A_B 3UMY_A_B 0.90 0.96 1.45 0.95 Rossmann-like domain in Ribosomal protein L1 & a+b domain in Ribosomal protein L1 Bacterial large subunit ribosomal RNA compare