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All interfaces > All interologs > Interface groups > group110 > 4QG3_A_B

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Licorice
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Licorice
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Chain
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Hydrophobicity
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Conservation*

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Rim - Core

Contacts -

4QG3_A
4QG3_B
Distance
Base Pair
Hbond nuc:res
Base Stacking
Residue conservation
A:1 [PRO] B:2133 [G] 4.85 B:2158 [A] 52.9
A:2 [LYS] B:2175 [C] 4.36 B:2123 [G] 58.09
A:3 [HIS] B:2174 [C] 4.93 B:2124 [G] 47.48
A:3 [HIS] B:2175 [C] 2.49 B:2123 [G] 47.48
A:3 [HIS] B:2176 [A] 4.72 B:2122 [U] 47.48
A:4 [GLY] B:2129 [C] 3.56 B:2159 [G] 72.64
A:4 [GLY] B:2130 [U] 3.51 72.64
A:4 [GLY] B:2175 [C] 4.83 B:2123 [G] 72.64
A:5 [LYS] B:2129 [C] 4.39 B:2159 [G] 76.57
A:5 [LYS] B:2130 [U] 3.02 76.57
A:5 [LYS] B:2131 [G] 3.21 76.57
A:5 [LYS] B:2132 [U] 3.53 76.57
A:6 [ARG] B:2128 [C] 4.06 B:2160 [G] 63.93
A:6 [ARG] B:2129 [C] 2.94 B:2159 [G] 63.93
A:6 [ARG] B:2174 [C] 4.3 B:2124 [G] 63.93
A:6 [ARG] B:2175 [C] 4.77 B:2123 [G] 63.93
A:7 [TYR] B:2129 [C] 4.78 B:2159 [G] 23.45
A:7 [TYR] B:2175 [C] 3.41 B:2123 [G] 23.45
A:7 [TYR] B:2176 [A] 2.33 B:2122 [U] 23.45
A:8 [ARG] B:2130 [U] 4.21 8.86
A:8 [ARG] B:2132 [U] 3.48 base:SC 8.86
A:35 [ALA] B:2127 [G] 4.63 B:2161 [C] 57.29
A:35 [ALA] B:2128 [C] 3.53 B:2160 [G] 57.29
A:36 [LYS] B:2127 [G] 3.67 B:2161 [C] 58.31
A:36 [LYS] B:2128 [C] 2.87 B:2160 [G] 58.31
A:37 [PHE] B:2125 [G] 4.18 B:2173 [A] 61.63
A:37 [PHE] B:2126 [A] 3.77 B:2162 [G] 61.63
A:37 [PHE] B:2127 [G] 3.8 B:2161 [C] 61.63
A:37 [PHE] B:2128 [C] 4.88 B:2160 [G] 61.63
A:40 [THR] B:2124 [G] 3.3 B:2174 [C] 82.48
A:40 [THR] B:2125 [G] 2.6 B:2173 [A] 82.48
A:40 [THR] B:2126 [A] 4.87 B:2162 [G] 82.48
A:42 [GLU] B:2123 [G] 3.07 B:2175 [C] base:SC 71.76
A:42 [GLU] B:2124 [G] 2.72 B:2174 [C] sugar:SC 71.76
A:42 [GLU] B:2175 [C] 4.54 B:2123 [G] 71.76
A:42 [GLU] B:2176 [A] 4.45 B:2122 [U] 71.76
A:44 [HIS] B:2123 [G] 3.97 B:2175 [C] 69.9
A:44 [HIS] B:2176 [A] 3.06 B:2122 [U] 69.9
A:44 [HIS] B:2177 [C] 3.58 B:2121 [G] 69.9
A:45 [ALA] B:2177 [C] 4.11 B:2121 [G] 57.91
A:46 [LYS] B:2177 [C] 4.43 B:2121 [G] 48.14
A:46 [LYS] B:2178 [C] 3.25 B:2120 [G] 48.14
A:46 [LYS] B:2179 [C] 4.48 B:2110 [G] 48.14
A:70 [LYS] B:2125 [G] 3.22 B:2173 [A] 74.88
A:70 [LYS] B:2126 [A] 4.15 B:2162 [G] 74.88
A:133 [PRO] B:2169 [A] 3.21 B:2112 [G] 94.64
A:133 [PRO] B:2170 [A] 3.83 B:2113 [U] 94.64
A:134 [ARG] B:2168 [G] 3.85 75.27
A:134 [ARG] B:2169 [A] 4.86 B:2112 [G] 75.27
A:134 [ARG] B:2170 [A] 2.57 B:2113 [U] 75.27
A:134 [ARG] B:2171 [A] 3.17 B:2167 [U] 75.27
A:164 [ARG] B:2122 [U] 4.36 B:2176 [A] 83.51
A:166 [ASP] B:2121 [G] 2.95 B:2177 [C] base:SC 82.83
A:166 [ASP] B:2122 [U] 3.3 B:2176 [A] 82.83
A:166 [ASP] B:2177 [C] 4.83 B:2121 [G] 82.83
A:166 [ASP] B:2178 [C] 4.89 B:2120 [G] 82.83
A:167 [LYS] B:2120 [G] 4.59 B:2178 [C] 61.85
A:167 [LYS] B:2121 [G] 3.43 B:2177 [C] 61.85
A:168 [THR] B:2120 [G] 3.74 B:2178 [C] 11.56
A:168 [THR] B:2121 [G] 3.68 B:2177 [C] 11.56
A:168 [THR] B:2178 [C] 2.6 B:2120 [G] sugar:SC 11.56
A:168 [THR] B:2179 [C] 3.43 B:2110 [G] 11.56
A:169 [GLY] B:2178 [C] 4.74 B:2120 [G] 72.53
A:170 [ALA] B:2121 [G] 4.35 B:2177 [C] 43.78
A:170 [ALA] B:2177 [C] 4.07 B:2121 [G] 43.78
A:170 [ALA] B:2178 [C] 4.08 B:2120 [G] 43.78
A:172 [HIS] B:2121 [G] 3.77 B:2177 [C] 84.13
A:172 [HIS] B:2122 [U] 2.78 B:2176 [A] base:SC 84.13
A:172 [HIS] B:2123 [G] 3.2 B:2175 [C] base/AA stacks 84.13
A:172 [HIS] B:2176 [A] 4.4 B:2122 [U] 84.13
A:172 [HIS] B:2177 [C] 3.12 B:2121 [G] 84.13
A:173 [ALA] B:2123 [G] 3.83 B:2175 [C] 37.6
A:173 [ALA] B:2124 [G] 4.98 B:2174 [C] 37.6
A:174 [PRO] B:2123 [G] 4.33 B:2175 [C] 25.61
A:174 [PRO] B:2124 [G] 3.85 B:2174 [C] 25.61
A:177 [LYS] B:2125 [G] 4.14 B:2173 [A] 80.06
A:177 [LYS] B:2126 [A] 4.14 B:2162 [G] 80.06
A:211 [SER] B:2177 [C] 3.63 B:2121 [G] 48.94
A:211 [SER] B:2178 [C] 2.66 B:2120 [G] 48.94
A:213 [TYR] B:2176 [A] 4.79 B:2122 [U] 28.09
A:213 [TYR] B:2177 [C] 3.36 B:2121 [G] 28.09
A:213 [TYR] B:2178 [C] 3.7 B:2120 [G] 28.09
A:215 [THR] B:2175 [C] 4.38 B:2123 [G] 83.0
A:215 [THR] B:2176 [A] 3.61 B:2122 [U] 83.0
A:216 [THR] B:2175 [C] 3.55 B:2123 [G] sugar:BB 82.33
A:217 [THR] B:2124 [G] 2.9 B:2174 [C] base:BB, sugar:SC 90.84
A:217 [THR] B:2125 [G] 3.37 B:2173 [A] 90.84
A:217 [THR] B:2174 [C] 4.72 B:2124 [G] 90.84
A:217 [THR] B:2175 [C] 3.05 B:2123 [G] 90.84
A:218 [MET] B:2124 [G] 4.0 B:2174 [C] 84.08
A:218 [MET] B:2125 [G] 4.05 B:2173 [A] 84.08
A:218 [MET] B:2127 [G] 3.6 B:2161 [C] 84.08
A:218 [MET] B:2128 [C] 4.48 B:2160 [G] 84.08
A:218 [MET] B:2173 [A] 3.52 B:2125 [G] 84.08
A:218 [MET] B:2174 [C] 3.05 B:2124 [G] 84.08
A:218 [MET] B:2175 [C] 3.64 B:2123 [G] 84.08
A:219 [VAL] B:2175 [C] 2.8 B:2123 [G] sugar:BB 86.28
A:219 [VAL] B:2176 [A] 3.16 B:2122 [U] 86.28
A:220 [PRO] B:2175 [C] 4.39 B:2123 [G] 79.89
A:220 [PRO] B:2176 [A] 3.43 B:2122 [U] 79.89
A:221 [SER] B:2176 [A] 3.19 B:2122 [U] 73.47
A:221 [SER] B:2177 [C] 2.55 B:2121 [G] 73.47

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*Conservation was calculated using Rate4Site
NB: conservation is missing (completly white) for a very small minority of cases in which no homologous sequences were found (e.g. synthetic proteins 7D3J_A & 7EU9_A)

Properties of this interface

Interolog group ID Structure ID Structure description
 UniProt ID
 		ECOD label(s)
 		RFAM label(s)
 		Is ribosome? RCSB PDB link
group110 4QG3_A_B A: 50s ribosomal protein l1, Thermus thermophilus (genetically engineered) B: Fragment of 23s rRNA, Thermus thermophilus (genetically engineered) P27150 Rossmann-like domain in Ribosomal protein L1 & a+b domain in Ribosomal protein L1 Bacterial large subunit ribosomal RNA ✔

Interologs

Total number of interologs for this interface: 6

Interface 1 Interface 2 Percentage conservation
 		Interface TM-score
 		Interface RMSD
 		Percentage identity
 		Common ECOD label(s)
 		Common RFAM label(s)
 		Explore both interfaces
4QG3_A_B 4QVI_A_B 0.98 1.0 0.35 0.95 Rossmann-like domain in Ribosomal protein L1 & a+b domain in Ribosomal protein L1 Bacterial large subunit ribosomal RNA compare
3U4M_A_B 4QG3_A_B 0.98 0.97 0.7 0.97 Rossmann-like domain in Ribosomal protein L1 & a+b domain in Ribosomal protein L1 Bacterial large subunit ribosomal RNA compare
3UMY_A_B 4QG3_A_B 0.83 0.93 1.66 0.95 Rossmann-like domain in Ribosomal protein L1 & a+b domain in Ribosomal protein L1 Bacterial large subunit ribosomal RNA compare
3U56_A_B 4QG3_A_B 0.98 0.98 0.75 0.95 Rossmann-like domain in Ribosomal protein L1 & a+b domain in Ribosomal protein L1 Bacterial large subunit ribosomal RNA compare
4QG3_A_B 7O7Y_Bv_B5 0.75 0.75 1.4 0.21 Rossmann-like domain in Ribosomal protein L1 & a+b domain in Ribosomal protein L1 compare
2HW8_A_B 4QG3_A_B 0.93 0.95 0.85 0.58 Rossmann-like domain in Ribosomal protein L1 & a+b domain in Ribosomal protein L1 compare