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All interfaces > All interologs > Interface groups > group110 > 4QVI_A_B

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Licorice
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Chain
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Hydrophobicity
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Conservation*

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Rim - Core

Contacts -

4QVI_A
4QVI_B
Distance
Base Pair
Hbond nuc:res
Base Stacking
Residue conservation
A:0 [MET] B:2129 [C] 4.92 B:2159 [G] 69.0
A:0 [MET] B:2134 [A] 3.04 B:2157 [G] 69.0
A:0 [MET] B:2135 [A] 3.18 B:2156 [G] 69.0
A:0 [MET] B:2152 [G] 4.91 B:2139 [C] 69.0
A:1 [PRO] B:2133 [G] 4.95 B:2158 [A] 41.15
A:2 [LYS] B:2151 [G] 4.52 B:2140 [C] 52.75
A:2 [LYS] B:2152 [G] 3.33 B:2139 [C] 52.75
A:2 [LYS] B:2175 [C] 4.43 B:2123 [G] 52.75
A:3 [HIS] B:2174 [C] 4.97 B:2124 [G] 32.08
A:3 [HIS] B:2175 [C] 2.59 B:2123 [G] 32.08
A:3 [HIS] B:2176 [A] 4.85 B:2122 [U] 32.08
A:4 [GLY] B:2129 [C] 3.59 B:2159 [G] 60.28
A:4 [GLY] B:2130 [U] 3.53 60.28
A:4 [GLY] B:2175 [C] 4.8 B:2123 [G] 60.28
A:5 [LYS] B:2129 [C] 4.4 B:2159 [G] 65.55
A:5 [LYS] B:2130 [U] 2.96 65.55
A:5 [LYS] B:2131 [G] 4.2 65.55
A:5 [LYS] B:2132 [U] 3.33 65.55
A:6 [ARG] B:2128 [C] 3.99 B:2160 [G] 51.3
A:6 [ARG] B:2129 [C] 2.99 B:2159 [G] 51.3
A:6 [ARG] B:2174 [C] 4.37 B:2124 [G] 51.3
A:6 [ARG] B:2175 [C] 4.74 B:2123 [G] 51.3
A:7 [TYR] B:2129 [C] 4.64 B:2159 [G] 35.49
A:7 [TYR] B:2175 [C] 3.34 B:2123 [G] 35.49
A:7 [TYR] B:2176 [A] 2.42 B:2122 [U] 35.49
A:8 [ARG] B:2130 [U] 4.45 28.41
A:8 [ARG] B:2132 [U] 4.01 28.41
A:34 [THR] B:2128 [C] 4.96 B:2160 [G] 31.87
A:35 [ALA] B:2127 [G] 4.75 B:2161 [C] 55.21
A:35 [ALA] B:2128 [C] 3.58 B:2160 [G] 55.21
A:36 [LYS] B:2127 [G] 3.79 B:2161 [C] 51.51
A:36 [LYS] B:2128 [C] 2.81 B:2160 [G] 51.51
A:37 [PHE] B:2125 [G] 4.3 B:2173 [A] 64.04
A:37 [PHE] B:2126 [A] 3.91 B:2162 [G] 64.04
A:37 [PHE] B:2127 [G] 3.76 B:2161 [C] 64.04
A:37 [PHE] B:2128 [C] 4.88 B:2160 [G] 64.04
A:40 [THR] B:2124 [G] 3.37 B:2174 [C] 79.91
A:40 [THR] B:2125 [G] 2.58 B:2173 [A] 79.91
A:42 [GLU] B:2123 [G] 3.14 B:2175 [C] base:SC 71.02
A:42 [GLU] B:2124 [G] 2.7 B:2174 [C] sugar:SC 71.02
A:42 [GLU] B:2175 [C] 4.53 B:2123 [G] 71.02
A:42 [GLU] B:2176 [A] 4.45 B:2122 [U] 71.02
A:44 [HIS] B:2123 [G] 4.09 B:2175 [C] 65.6
A:44 [HIS] B:2176 [A] 3.1 B:2122 [U] 65.6
A:44 [HIS] B:2177 [C] 3.58 B:2121 [G] 65.6
A:45 [ALA] B:2177 [C] 4.15 B:2121 [G] 55.94
A:46 [LYS] B:2177 [C] 4.17 B:2121 [G] 48.07
A:46 [LYS] B:2178 [C] 3.04 B:2120 [G] 48.07
A:46 [LYS] B:2179 [C] 4.25 B:2110 [G] 48.07
A:70 [LYS] B:2125 [G] 3.48 B:2173 [A] 77.9
A:70 [LYS] B:2126 [A] 3.72 B:2162 [G] 77.9
A:130 [ILE] B:2170 [A] 4.85 B:2113 [U] 75.86
A:133 [PRO] B:2169 [A] 4.07 B:2112 [G] 93.9
A:133 [PRO] B:2170 [A] 4.7 B:2113 [U] 93.9
A:134 [ARG] B:2168 [G] 4.18 77.76
A:134 [ARG] B:2170 [A] 2.93 B:2113 [U] 77.76
A:134 [ARG] B:2171 [A] 2.86 B:2167 [U] 77.76
A:164 [ARG] B:2122 [U] 4.51 B:2176 [A] 82.73
A:166 [ASP] B:2121 [G] 2.89 B:2177 [C] base:SC 83.81
A:166 [ASP] B:2122 [U] 3.27 B:2176 [A] 83.81
A:166 [ASP] B:2177 [C] 4.84 B:2121 [G] 83.81
A:166 [ASP] B:2178 [C] 4.92 B:2120 [G] 83.81
A:167 [LYS] B:2120 [G] 4.12 B:2178 [C] 65.6
A:167 [LYS] B:2121 [G] 3.55 B:2177 [C] 65.6
A:168 [THR] B:2120 [G] 3.7 B:2178 [C] 28.54
A:168 [THR] B:2121 [G] 3.85 B:2177 [C] 28.54
A:168 [THR] B:2178 [C] 2.57 B:2120 [G] sugar:SC 28.54
A:168 [THR] B:2179 [C] 3.29 B:2110 [G] 28.54
A:169 [GLY] B:2178 [C] 4.72 B:2120 [G] 71.25
A:170 [ALA] B:2121 [G] 4.18 B:2177 [C] 46.04
A:170 [ALA] B:2177 [C] 4.24 B:2121 [G] 46.04
A:170 [ALA] B:2178 [C] 3.92 B:2120 [G] 46.04
A:172 [HIS] B:2121 [G] 3.79 B:2177 [C] 84.36
A:172 [HIS] B:2122 [U] 2.93 B:2176 [A] base:SC 84.36
A:172 [HIS] B:2123 [G] 3.37 B:2175 [C] base/AA stacks 84.36
A:172 [HIS] B:2176 [A] 4.33 B:2122 [U] 84.36
A:172 [HIS] B:2177 [C] 2.9 B:2121 [G] 84.36
A:173 [ALA] B:2123 [G] 3.91 B:2175 [C] 39.53
A:174 [PRO] B:2123 [G] 4.34 B:2175 [C] 7.5
A:174 [PRO] B:2124 [G] 3.98 B:2174 [C] 7.5
A:177 [LYS] B:2125 [G] 4.05 B:2173 [A] 78.81
A:177 [LYS] B:2126 [A] 4.62 B:2162 [G] 78.81
A:211 [SER] B:2177 [C] 3.78 B:2121 [G] 40.46
A:211 [SER] B:2178 [C] 2.67 B:2120 [G] 40.46
A:213 [TYR] B:2176 [A] 4.79 B:2122 [U] 19.03
A:213 [TYR] B:2177 [C] 3.42 B:2121 [G] 19.03
A:213 [TYR] B:2178 [C] 3.74 B:2120 [G] 19.03
A:215 [THR] B:2175 [C] 4.23 B:2123 [G] 79.02
A:215 [THR] B:2176 [A] 3.5 B:2122 [U] 79.02
A:216 [THR] B:2175 [C] 3.52 B:2123 [G] sugar:BB 77.29
A:217 [THR] B:2124 [G] 2.86 B:2174 [C] base:BB, sugar:SC 89.46
A:217 [THR] B:2125 [G] 3.29 B:2173 [A] 89.46
A:217 [THR] B:2174 [C] 4.88 B:2124 [G] 89.46
A:217 [THR] B:2175 [C] 3.22 B:2123 [G] 89.46
A:218 [LEU] B:2124 [G] 3.48 B:2174 [C] 83.3
A:218 [LEU] B:2127 [G] 4.15 B:2161 [C] 83.3
A:218 [LEU] B:2128 [C] 3.51 B:2160 [G] 83.3
A:218 [LEU] B:2174 [C] 3.11 B:2124 [G] 83.3
A:218 [LEU] B:2175 [C] 3.61 B:2123 [G] 83.3
A:219 [GLY] B:2175 [C] 2.67 B:2123 [G] sugar:BB 83.56
A:219 [GLY] B:2176 [A] 3.26 B:2122 [U] 83.56
A:220 [PRO] B:2175 [C] 4.5 B:2123 [G] 80.09
A:220 [PRO] B:2176 [A] 3.56 B:2122 [U] 80.09
A:221 [SER] B:2176 [A] 3.31 B:2122 [U] 79.79
A:221 [SER] B:2177 [C] 2.79 B:2121 [G] 79.79

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*Conservation was calculated using Rate4Site
NB: conservation is missing (completly white) for a very small minority of cases in which no homologous sequences were found (e.g. synthetic proteins 7D3J_A & 7EU9_A)

Properties of this interface

Interolog group ID Structure ID Structure description
 UniProt ID
 		ECOD label(s)
 		RFAM label(s)
 		Is ribosome? RCSB PDB link
group110 4QVI_A_B A: 50s ribosomal protein l1, Thermus thermophilus (genetically engineered) B: Fragment of 23s rRNA, Thermus thermophilus (genetically engineered) P27150 Rossmann-like domain in Ribosomal protein L1 & a+b domain in Ribosomal protein L1 Bacterial large subunit ribosomal RNA ✔

Interologs

Total number of interologs for this interface: 6

Interface 1 Interface 2 Percentage conservation
 		Interface TM-score
 		Interface RMSD
 		Percentage identity
 		Common ECOD label(s)
 		Common RFAM label(s)
 		Explore both interfaces
4QVI_A_B 7O7Y_Bv_B5 0.76 0.75 1.38 0.21 Rossmann-like domain in Ribosomal protein L1 & a+b domain in Ribosomal protein L1 compare
3UMY_A_B 4QVI_A_B 0.84 0.93 1.61 0.89 Rossmann-like domain in Ribosomal protein L1 & a+b domain in Ribosomal protein L1 Bacterial large subunit ribosomal RNA compare
2HW8_A_B 4QVI_A_B 0.93 0.94 0.79 0.53 Rossmann-like domain in Ribosomal protein L1 & a+b domain in Ribosomal protein L1 compare
3U4M_A_B 4QVI_A_B 0.96 0.96 0.81 0.93 Rossmann-like domain in Ribosomal protein L1 & a+b domain in Ribosomal protein L1 Bacterial large subunit ribosomal RNA compare
3U56_A_B 4QVI_A_B 0.96 0.97 0.76 0.9 Rossmann-like domain in Ribosomal protein L1 & a+b domain in Ribosomal protein L1 Bacterial large subunit ribosomal RNA compare
4QG3_A_B 4QVI_A_B 0.98 1.0 0.35 0.95 Rossmann-like domain in Ribosomal protein L1 & a+b domain in Ribosomal protein L1 Bacterial large subunit ribosomal RNA compare