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All interfaces > All interologs > Interface groups > group110 > 7O7Y_Bv_B5

Interface analysis

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Licorice
Surface

RNA

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Licorice
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Chain
Chain (with hetatm)
Chainbow
Hydrophobicity
Electrostatics (surface only)
Conservation*

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Rim - Core

Contacts -

7O7Y_Bv
7O7Y_B5
Distance
Base Pair
Hbond nuc:res
Base Stacking
Residue conservation
Bv:24 [LYS] B5:3780 [C] 4.09 B5:3701 [G] 53.55
Bv:25 [ARG] B5:3705 [G] 4.61 B5:3766 [C] 46.28
Bv:25 [ARG] B5:3706 [G] 2.61 B5:3765 [C] 46.28
Bv:25 [ARG] B5:3707 [C] 3.02 B5:3764 [G] 46.28
Bv:26 [ARG] B5:3706 [G] 3.61 B5:3765 [C] 93.34
Bv:27 [LYS] B5:3705 [G] 2.93 B5:3766 [C] 46.19
Bv:27 [LYS] B5:3706 [G] 3.32 B5:3765 [C] 46.19
Bv:28 [PHE] B5:3703 [G] 4.82 B5:3778 [A] 86.45
Bv:28 [PHE] B5:3704 [A] 4.46 86.45
Bv:28 [PHE] B5:3705 [G] 3.63 B5:3766 [C] 86.45
Bv:28 [PHE] B5:3706 [G] 4.14 B5:3765 [C] 86.45
Bv:31 [THR] B5:3702 [G] 2.22 B5:3779 [C] sugar:SC 91.17
Bv:31 [THR] B5:3703 [G] 3.38 B5:3778 [A] 91.17
Bv:33 [GLU] B5:3701 [G] 3.21 B5:3780 [C] base:SC 87.59
Bv:33 [GLU] B5:3702 [G] 3.25 B5:3779 [C] 87.59
Bv:33 [GLU] B5:3780 [C] 4.72 B5:3701 [G] 87.59
Bv:35 [GLN] B5:3701 [G] 4.64 B5:3780 [C] 71.76
Bv:35 [GLN] B5:3781 [A] 4.49 B5:3700 [U] 71.76
Bv:35 [GLN] B5:3782 [C] 4.47 B5:3699 [G] 71.76
Bv:36 [ILE] B5:3782 [C] 4.77 B5:3699 [G] 82.25
Bv:37 [SER] B5:3782 [C] 3.79 B5:3699 [G] 43.79
Bv:37 [SER] B5:3783 [U] 3.95 B5:3698 [A] 43.79
Bv:39 [LYS] B5:3456 [A2M] 3.39 B5:3461 [U] 79.34
Bv:39 [LYS] B5:3457 [G] 3.76 B5:3460 [A] 79.34
Bv:40 [ASN] B5:3456 [A2M] 3.18 B5:3461 [U] 80.17
Bv:40 [ASN] B5:3457 [G] 3.98 B5:3460 [A] 80.17
Bv:98 [LYS] B5:3770 [G] 4.92 74.98
Bv:98 [LYS] B5:3771 [G] 3.26 74.98
Bv:98 [LYS] B5:3772 [U] 3.0 74.98
Bv:98 [LYS] B5:3773 [G] 4.21 74.98
Bv:101 [LYS] B5:3773 [G] 4.58 88.93
Bv:101 [LYS] B5:3775 [A] 4.9 B5:3691 [U] 88.93
Bv:102 [LYS] B5:3769 [C] 4.15 77.5
Bv:102 [LYS] B5:3770 [G] 3.21 77.5
Bv:105 [LYS] B5:3768 [C] 4.98 61.06
Bv:105 [LYS] B5:3769 [C] 3.06 61.06
Bv:105 [LYS] B5:3770 [G] 4.88 61.06
Bv:105 [LYS] B5:3776 [A] 4.01 B5:3693 [G] 61.06
Bv:105 [LYS] B5:3777 [U] 4.14 B5:3695 [A] 61.06
Bv:106 [LYS] B5:3769 [C] 4.38 64.54
Bv:158 [GLN] B5:3701 [G] 4.81 B5:3780 [C] 60.08
Bv:160 [LYS] B5:3699 [G] 4.53 B5:3782 [C] 68.24
Bv:160 [LYS] B5:3700 [U] 4.57 B5:3781 [A] 68.24
Bv:161 [LYS] B5:3699 [G] 4.44 B5:3782 [C] 64.3
Bv:162 [VAL] B5:3699 [G] 3.7 B5:3782 [C] 41.77
Bv:162 [VAL] B5:3700 [U] 3.92 B5:3781 [A] 41.77
Bv:162 [VAL] B5:3783 [U] 4.49 B5:3698 [A] 41.77
Bv:163 [LEU] B5:3783 [U] 3.67 B5:3698 [A] 42.03
Bv:164 [CYS] B5:3699 [G] 2.84 B5:3782 [C] 30.07
Bv:164 [CYS] B5:3700 [U] 4.36 B5:3781 [A] 30.07
Bv:164 [CYS] B5:3782 [C] 3.56 B5:3699 [G] 30.07
Bv:164 [CYS] B5:3783 [U] 3.66 B5:3698 [A] 30.07
Bv:165 [LEU] B5:3700 [U] 4.7 B5:3781 [A] 60.2
Bv:166 [ALA] B5:3700 [U] 4.29 B5:3781 [A] 54.3
Bv:166 [ALA] B5:3701 [G] 3.17 B5:3780 [C] 54.3
Bv:167 [VAL] B5:3701 [G] 3.81 B5:3780 [C] 63.17
Bv:168 [ALA] B5:3701 [G] 4.49 B5:3780 [C] 40.7
Bv:168 [ALA] B5:3702 [G] 4.35 B5:3779 [C] 40.7
Bv:171 [HIS] B5:3703 [G] 4.4 B5:3778 [A] 58.71
Bv:199 [GLN] B5:3457 [G] 2.96 B5:3460 [A] 40.72
Bv:199 [GLN] B5:3458 [A] 2.52 40.72
Bv:202 [ARG] B5:3783 [U] 4.19 B5:3698 [A] 47.24
Bv:202 [ARG] B5:3784 [A] 2.5 B5:3688 [G] 47.24
Bv:203 [ALA] B5:3782 [C] 4.88 B5:3699 [G] 67.65
Bv:203 [ALA] B5:3783 [U] 4.19 B5:3698 [A] 67.65
Bv:205 [TYR] B5:3781 [A] 4.84 B5:3700 [U] 14.53
Bv:205 [TYR] B5:3782 [C] 3.17 B5:3699 [G] 14.53
Bv:205 [TYR] B5:3783 [U] 3.68 B5:3698 [A] 14.53
Bv:207 [LYS] B5:3701 [G] 4.44 B5:3780 [C] 97.26
Bv:207 [LYS] B5:3780 [C] 2.73 B5:3701 [G] sugar:SC 97.26
Bv:207 [LYS] B5:3781 [A] 2.46 B5:3700 [U] sugar:SC 97.26
Bv:208 [SER] B5:3780 [C] 4.91 B5:3701 [G] 88.17
Bv:209 [THR] B5:3702 [G] 2.61 B5:3779 [C] sugar:SC 90.55
Bv:209 [THR] B5:3703 [G] 3.84 B5:3778 [A] 90.55
Bv:209 [THR] B5:3780 [C] 3.68 B5:3701 [G] 90.55
Bv:210 [MET] B5:3702 [G] 4.63 B5:3779 [C] 96.73
Bv:210 [MET] B5:3706 [G] 4.54 B5:3765 [C] 96.73
Bv:210 [MET] B5:3779 [C] 3.3 B5:3702 [G] 96.73
Bv:210 [MET] B5:3780 [C] 4.07 B5:3701 [G] 96.73
Bv:211 [GLY] B5:3780 [C] 3.24 B5:3701 [G] sugar:BB 91.6
Bv:211 [GLY] B5:3781 [A] 3.97 B5:3700 [U] 91.6
Bv:212 [LYS] B5:3781 [A] 4.9 B5:3700 [U] 41.3
Bv:213 [PRO] B5:3781 [A] 3.18 B5:3700 [U] 64.26
Bv:213 [PRO] B5:3782 [C] 3.61 B5:3699 [G] 64.26

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*Conservation was calculated using Rate4Site
NB: conservation is missing (completly white) for a very small minority of cases in which no homologous sequences were found (e.g. synthetic proteins 7D3J_A & 7EU9_A)

Properties of this interface

Interolog group ID Structure ID Structure description
 UniProt ID
 		ECOD label(s)
 		RFAM label(s)
 		Is ribosome? RCSB PDB link
group110 7O7Y_Bv_B5 Bv: Ribosomal protein ul1, Oryctolagus cuniculus (natural) B5: 28s rRNA, Oryctolagus cuniculus (natural) G1SKZ8 Rossmann-like domain in Ribosomal protein L1 & a+b domain in Ribosomal protein L1 Eukaryotic large subunit ribosomal RNA ✔

Interologs

Total number of interologs for this interface: 6

Interface 1 Interface 2 Percentage conservation
 		Interface TM-score
 		Interface RMSD
 		Percentage identity
 		Common ECOD label(s)
 		Common RFAM label(s)
 		Explore both interfaces
4QG3_A_B 7O7Y_Bv_B5 0.75 0.75 1.4 0.21 Rossmann-like domain in Ribosomal protein L1 & a+b domain in Ribosomal protein L1 compare
3U4M_A_B 7O7Y_Bv_B5 0.77 0.72 1.64 0.26 Rossmann-like domain in Ribosomal protein L1 & a+b domain in Ribosomal protein L1 compare
3UMY_A_B 7O7Y_Bv_B5 0.61 0.71 2.01 0.15 Rossmann-like domain in Ribosomal protein L1 & a+b domain in Ribosomal protein L1 compare
4QVI_A_B 7O7Y_Bv_B5 0.76 0.75 1.38 0.21 Rossmann-like domain in Ribosomal protein L1 & a+b domain in Ribosomal protein L1 compare
2HW8_A_B 7O7Y_Bv_B5 0.72 0.76 1.79 0.17 Rossmann-like domain in Ribosomal protein L1 & a+b domain in Ribosomal protein L1 compare
3U56_A_B 7O7Y_Bv_B5 0.73 0.72 1.94 0.21 Rossmann-like domain in Ribosomal protein L1 & a+b domain in Ribosomal protein L1 compare