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All interfaces > All interologs > Interface groups > group111 > 2R8S_H_R

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Licorice
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Licorice
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Chain
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Hydrophobicity
Electrostatics (surface only)
Conservation*

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Rim - Core

Contacts -

2R8S_H
2R8S_R
Distance
Base Pair
Hbond nuc:res
Base Stacking
Residue conservation
H:1 [GLU] R:194 [G] 4.09 R:128 [C] 68.66
H:2 [VAL] R:131 [U] 3.38 R:192 [A] 71.05
H:26 [GLY] R:131 [U] 2.82 R:192 [A] sugar:BB 90.92
H:26 [GLY] R:132 [C] 3.42 R:191 [G] 90.92
H:27 [PHE] R:131 [U] 3.42 R:192 [A] 46.57
H:27 [PHE] R:132 [C] 3.38 R:191 [G] 46.57
H:28 [ASN] R:131 [U] 4.66 R:192 [A] 80.63
H:28 [ASN] R:132 [C] 2.91 R:191 [G] 80.63
H:28 [ASN] R:133 [A] 3.15 R:190 [U] 80.63
H:30 [TYR] R:133 [A] 4.56 R:190 [U] 56.64
H:30 [TYR] R:179 [U] 3.48 56.64
H:30 [TYR] R:180 [G] 4.16 R:138 [C] 56.64
H:31 [SER] R:132 [C] 4.07 R:191 [G] 65.59
H:31 [SER] R:180 [G] 4.06 R:138 [C] 65.59
H:50 [TYR] R:175 [G] 4.33 R:165 [C] 4.49
H:52 [SER] R:175 [G] 4.27 R:165 [C] 23.59
H:52 [SER] R:176 [G] 2.68 23.59
H:53 [SER] R:176 [G] 3.87 64.86
H:53 [SER] R:177 [U] 4.35 64.86
H:53 [SER] R:179 [U] 4.76 64.86
H:54 [SER] R:176 [G] 2.97 45.43
H:54 [SER] R:177 [U] 3.41 45.43
H:57 [TYR] R:174 [G] 4.56 R:166 [C] 59.82
H:57 [TYR] R:175 [G] 3.6 R:165 [C] 59.82
H:57 [TYR] R:176 [G] 3.67 59.82
H:98 [ARG] R:130 [U] 3.24 63.48
H:98 [ARG] R:131 [U] 3.04 R:192 [A] 63.48
H:98 [ARG] R:132 [C] 4.8 R:191 [G] 63.48
H:99 [ARG] R:130 [U] 3.35 5.46
H:100 [ALA] R:130 [U] 2.79 base:BB 47.01
H:100 [ALA] R:131 [U] 3.92 R:192 [A] 47.01
H:101 [ALA] R:176 [G] 4.75 12.0
H:101 [ALA] R:181 [G] 4.71 R:137 [C] 12.0
H:102 [GLY] R:165 [C] 4.15 R:175 [G] 14.17
H:102 [GLY] R:166 [C] 3.49 R:174 [G] 14.17
H:102 [GLY] R:175 [G] 2.77 R:165 [C] base:BB 14.17
H:102 [GLY] R:176 [G] 3.39 14.17
H:103 [MET] R:130 [U] 4.18 2.98
H:103 [MET] R:165 [C] 3.78 R:175 [G] 2.98
H:103 [MET] R:166 [C] 3.38 R:174 [G] 2.98
H:103 [MET] R:175 [G] 4.99 R:165 [C] 2.98
H:103 [MET] R:181 [G] 4.74 R:137 [C] 2.98
H:104 [SER] R:166 [C] 3.37 R:174 [G] 5.93
H:104 [SER] R:174 [G] 3.35 R:166 [C] 5.93
H:104 [SER] R:175 [G] 2.67 R:165 [C] base:SC, sugar:SC 5.93
H:104 [SER] R:176 [G] 4.22 5.93
H:105 [THR] R:166 [C] 2.69 R:174 [G] sugar:BB, sugar:SC 25.49
H:105 [THR] R:167 [U] 2.71 R:173 [A] 25.49
H:105 [THR] R:174 [G] 4.16 R:166 [C] 25.49
H:106 [TYR] R:130 [U] 3.56 0.0
H:106 [TYR] R:166 [C] 3.34 R:174 [G] 0.0
H:106 [TYR] R:167 [U] 3.68 R:173 [A] 0.0
H:107 [GLY] R:130 [U] 2.78 base:BB, base:BB 0.41
H:108 [PHE] R:130 [U] 4.08 0.15
H:109 [ASP] R:130 [U] 2.59 sugar:SC base/AA stacks 26.37
H:109 [ASP] R:131 [U] 4.38 R:192 [A] 26.37
H:110 [TYR] R:130 [U] 4.36 0.9
H:110 [TYR] R:131 [U] 3.39 R:192 [A] sugar:SC 0.9

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*Conservation was calculated using Rate4Site
NB: conservation is missing (completly white) for a very small minority of cases in which no homologous sequences were found (e.g. synthetic proteins 7D3J_A & 7EU9_A)

Properties of this interface

Interolog group ID Structure ID Structure description
 UniProt ID
 		ECOD label(s)
 		RFAM label(s)
 		Is ribosome? RCSB PDB link
group111 2R8S_H_R H: Fab heavy chain, Mus musculus (natural) R: P4-p6 RNA ribozyme domain Immunoglobulin/Fibronectin type III/E set domains/PapD-like ✘

Interologs

Total number of interologs for this interface: 3

Interface 1 Interface 2 Percentage conservation
 		Interface TM-score
 		Interface RMSD
 		Percentage identity
 		Common ECOD label(s)
 		Common RFAM label(s)
 		Explore both interfaces
2R8S_H_R 6B14_H_R 0.20 0.63 3.45 0.12 Immunoglobulin/Fibronectin type III/E set domains/PapD-like compare
2R8S_H_R 6B3K_H_R 0.15 0.63 3.5 0.0 Immunoglobulin/Fibronectin type III/E set domains/PapD-like compare
2R8S_H_R 7MLX_H_R 0.19 0.75 3.05 0.0 Immunoglobulin/Fibronectin type III/E set domains/PapD-like compare