Interface analysis
Style
Protein
CartoonLicorice
Surface
RNA
CartoonLicorice
Surface
Color
StructureStructure (with hetatm)
Chain
Chainbow
View
Focus on
InterfaceRNA
Protein
All
Show chains
Interface
show interface as licoriceCommon contacts -
2R8S_H
|
2R8S_R
|
6B14_H
|
6B14_R
|
Conserved?
|
---|---|---|---|---|
H:52 [SER] | R:175 [G] | H:55 [SER] | R:41 [C] | ✔ |
H:57 [TYR] | R:175 [G] | H:60 [SER] | R:41 [C] | ✔ |
H:102 [GLY] | R:165 [C] | H:105 [ARG] | R:36 [C] | ✔ |
H:103 [MET] | R:165 [C] | H:106 [ARG] | R:36 [C] | ✔ |
H:57 [TYR] | R:174 [G] | H:60 [SER] | R:40 [A] | ❌ 6B14_H_R |
H:102 [GLY] | R:175 [G] | H:105 [ARG] | R:41 [C] | ❌ 6B14_H_R |
H:103 [MET] | R:175 [G] | H:106 [ARG] | R:41 [C] | ❌ 6B14_H_R |
H:99 [ARG] | R:174 [G] | H:102 [GLN] | R:40 [A] | ❌ 2R8S_H_R |
H:102 [GLY] | R:174 [G] | H:105 [ARG] | R:40 [A] | ❌ 2R8S_H_R |
H:106 [TYR] | R:174 [G] | H:110 [ARG] | R:40 [A] | ❌ 2R8S_H_R |
H:108 [PHE] | R:174 [G] | H:112 [PHE] | R:40 [A] | ❌ 2R8S_H_R |
H:52 [SER] | R:174 [G] | H:55 [SER] | R:40 [A] | ❌ 2R8S_H_R |
H:53 [SER] | R:175 [G] | H:56 [PRO] | R:41 [C] | ❌ 2R8S_H_R |
H:53 [SER] | R:174 [G] | H:56 [PRO] | R:40 [A] | ❌ 2R8S_H_R |
H:104 [SER] | R:174 [G] | H:108 [SER] | R:40 [A] | ❌ 6B14_H:108 no longer at interface |
H:104 [SER] | R:175 [G] | H:108 [SER] | R:41 [C] | ❌ 6B14_H:108 no longer at interface |
H:105 [THR] | R:174 [G] | H:109 [GLY] | R:40 [A] | ❌ 6B14_H:109 no longer at interface |
H:50 [TYR] | R:175 [G] | H:53 [SER] | R:41 [C] | ❌ 6B14_H:53 no longer at interface |
H:33 [SER] | R:174 [G] | H:36 [SER] | R:40 [A] | ❌ 2R8S_H:33 no longer at interface |
H:35 [HIS] | R:174 [G] | H:38 [HIS] | R:40 [A] | ❌ 2R8S_H:35 no longer at interface |
H:55 [TYR] | R:175 [G] | H:58 [SER] | R:41 [C] | ❌ 2R8S_H:55 no longer at interface |
H:59 [TYR] | R:175 [G] | H:62 [TYR] | R:41 [C] | ❌ 2R8S_H:59 no longer at interface |
H:59 [TYR] | R:174 [G] | H:62 [TYR] | R:40 [A] | ❌ 2R8S_H:59 no longer at interface |
Properties of this pair
Common ECOD label(s) |
Common RFAM label(s) |
Interface TM-score |
Interface RMSD |
Percentage identity |
Protein TM-score |
RNA TM-score |
Protein coverage |
RNA coverage |
Percentage conservation |
Apolar conservation |
H-bond conservation |
Percentage switching out |
---|---|---|---|---|---|---|---|---|---|---|---|---|
Immunoglobulin/Fibronectin type III/E set domains/PapD-like | 0.63 | 3.45 | 0.12 | 0.82 | 0.27 | 0.71 | 0.43 | 0.20 | 0.13 | 0.00 | 0.47 |
Other pairs involving 2R8S_H_R or 6B14_H_R
Total number of entries: 6
Interface 1 | Interface 2 |
Percentage conservation |
Interface TM-score |
Interface RMSD |
Percentage identity |
Common ECOD label(s) |
Common RFAM label(s) |
Explore both interfaces |
---|---|---|---|---|---|---|---|---|
6B14_H_R | 7MLX_H_R | 0.98 | 0.79 | 1.24 | 0.86 | Immunoglobulin/Fibronectin type III/E set domains/PapD-like | compare | |
6B14_H_R | 6DB8_H_R | 0.91 | 0.72 | 2.52 | 0.94 | Immunoglobulin/Fibronectin type III/E set domains/PapD-like | compare | |
6B14_H_R | 6X5M_h_r | 0.98 | 0.79 | 2.12 | 1.0 | Immunoglobulin/Fibronectin type III/E set domains/PapD-like | compare | |
2R8S_H_R | 6B14_H_R | 0.20 | 0.63 | 3.45 | 0.12 | Immunoglobulin/Fibronectin type III/E set domains/PapD-like | compare | |
2R8S_H_R | 6B3K_H_R | 0.15 | 0.63 | 3.5 | 0.0 | Immunoglobulin/Fibronectin type III/E set domains/PapD-like | compare | |
2R8S_H_R | 7MLX_H_R | 0.19 | 0.75 | 3.05 | 0.0 | Immunoglobulin/Fibronectin type III/E set domains/PapD-like | compare |