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All interfaces > All interologs > Interface groups > group111 > 6B14_H_R

Interface analysis

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Protein

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Licorice
Surface

RNA

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Licorice
Surface

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Chain
Chain (with hetatm)
Chainbow
Hydrophobicity
Electrostatics (surface only)
Conservation*

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Interface

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Rim - Core

Contacts -

6B14_H
6B14_R
Distance
Base Pair
Hbond nuc:res
Base Stacking
Residue conservation
H:34 [TYR] R:38 [A] 2.82 sugar:BB base/AA stacks 68.53
H:34 [TYR] R:39 [A] 4.25 R:42 [A] 68.53
H:35 [SER] R:38 [A] 4.84 44.74
H:36 [SER] R:40 [A] 4.23 5.83
H:38 [HIS] R:40 [A] 3.69 32.49
H:55 [SER] R:40 [A] 4.37 33.09
H:55 [SER] R:41 [C] 3.85 33.09
H:56 [PRO] R:39 [A] 3.87 R:42 [A] 32.23
H:56 [PRO] R:40 [A] 3.99 32.23
H:56 [PRO] R:41 [C] 3.09 base:BB 32.23
H:56 [PRO] R:42 [A] 4.4 R:39 [A] 32.23
H:57 [TYR] R:38 [A] 2.8 sugar:SC 42.94
H:57 [TYR] R:39 [A] 3.28 R:42 [A] base/AA stacks 42.94
H:57 [TYR] R:42 [A] 3.48 R:39 [A] 42.94
H:58 [SER] R:41 [C] 2.7 base:SC 51.03
H:58 [SER] R:42 [A] 3.69 R:39 [A] 51.03
H:60 [SER] R:41 [C] 2.61 base:SC 62.83
H:62 [TYR] R:40 [A] 4.94 3.29
H:62 [TYR] R:41 [C] 3.49 sugar:SC 3.29
H:102 [GLN] R:40 [A] 3.03 base:SC, base:SC 3.1
H:103 [GLY] R:39 [A] 3.83 R:42 [A] 30.29
H:104 [TYR] R:38 [A] 3.63 2.13
H:104 [TYR] R:39 [A] 3.32 R:42 [A] 2.13
H:105 [ARG] R:36 [C] 3.3 R:44 [G] base/AA stacks 24.42
H:105 [ARG] R:37 [G] 2.91 R:43 [C] base:SC 24.42
H:105 [ARG] R:38 [A] 4.91 24.42
H:105 [ARG] R:39 [A] 2.89 R:42 [A] sugar:SC 24.42
H:105 [ARG] R:40 [A] 3.94 24.42
H:106 [ARG] R:36 [C] 3.31 R:44 [G] 2.13
H:106 [ARG] R:37 [G] 3.25 R:43 [C] 2.13
H:106 [ARG] R:39 [A] 4.68 R:42 [A] 2.13
H:110 [ARG] R:40 [A] 2.97 base/AA stacks 0.95
H:112 [PHE] R:40 [A] 4.61 1.56

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*Conservation was calculated using Rate4Site
NB: conservation is missing (completly white) for a very small minority of cases in which no homologous sequences were found (e.g. synthetic proteins 7D3J_A & 7EU9_A)

Properties of this interface

Interolog group ID Structure ID Structure description
 UniProt ID
 		ECOD label(s)
 		RFAM label(s)
 		Is ribosome? RCSB PDB link
group111 6B14_H_R H: Heavy chain of fab bl3-6s97n, Mus musculus (genetically engineered) R: RNA (86-mer), Synthetic construct (synthetic) Immunoglobulin/Fibronectin type III/E set domains/PapD-like ✘

Interologs

Total number of interologs for this interface: 4

Interface 1 Interface 2 Percentage conservation
 		Interface TM-score
 		Interface RMSD
 		Percentage identity
 		Common ECOD label(s)
 		Common RFAM label(s)
 		Explore both interfaces
6B14_H_R 7MLX_H_R 0.98 0.79 1.24 0.86 Immunoglobulin/Fibronectin type III/E set domains/PapD-like compare
6B14_H_R 6DB8_H_R 0.91 0.72 2.52 0.94 Immunoglobulin/Fibronectin type III/E set domains/PapD-like compare
6B14_H_R 6X5M_h_r 0.98 0.79 2.12 1.0 Immunoglobulin/Fibronectin type III/E set domains/PapD-like compare
2R8S_H_R 6B14_H_R 0.20 0.63 3.45 0.12 Immunoglobulin/Fibronectin type III/E set domains/PapD-like compare