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All interfaces > All interologs > Interface groups > group111 > 6B3K_H_R

Interface analysis

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Protein

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Licorice
Surface

RNA

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Licorice
Surface

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Chain
Chain (with hetatm)
Chainbow
Hydrophobicity
Electrostatics (surface only)
Conservation*

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Interface

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Rim - Core

Contacts -

6B3K_H
6B3K_R
Distance
Base Pair
Hbond nuc:res
Base Stacking
Residue conservation
H:34 [TYR] R:38 [A] 3.0 sugar:BB base/AA stacks 68.53
H:34 [TYR] R:39 [G] 4.19 R:42 [C] 68.53
H:36 [SER] R:40 [A] 4.24 5.83
H:38 [HIS] R:40 [A] 3.61 32.49
H:55 [SER] R:40 [A] 4.42 33.09
H:55 [SER] R:41 [C] 3.74 33.09
H:56 [PRO] R:39 [G] 3.74 R:42 [C] 32.23
H:56 [PRO] R:40 [A] 3.86 32.23
H:56 [PRO] R:41 [C] 3.05 base:BB 32.23
H:56 [PRO] R:42 [C] 4.91 R:39 [G] 32.23
H:57 [TYR] R:38 [A] 2.66 sugar:SC 42.94
H:57 [TYR] R:39 [G] 3.3 R:42 [C] base/AA stacks 42.94
H:57 [TYR] R:42 [C] 4.43 R:39 [G] 42.94
H:58 [SER] R:41 [C] 2.58 base:SC, base:SC 51.03
H:58 [SER] R:42 [C] 3.57 R:39 [G] 51.03
H:60 [SER] R:41 [C] 2.55 base:SC 62.83
H:62 [TYR] R:40 [A] 4.9 3.29
H:62 [TYR] R:41 [C] 3.59 3.29
H:102 [GLN] R:40 [A] 2.91 base:SC, base:SC 3.1
H:103 [GLY] R:39 [G] 3.93 R:42 [C] 30.29
H:104 [TYR] R:38 [A] 3.56 2.13
H:104 [TYR] R:39 [G] 3.33 R:42 [C] 2.13
H:105 [ARG] R:36 [C] 3.36 R:44 [G] base/AA stacks 24.42
H:105 [ARG] R:37 [G] 2.91 R:43 [C] base:SC 24.42
H:105 [ARG] R:38 [A] 4.97 24.42
H:105 [ARG] R:39 [G] 2.95 R:42 [C] sugar:SC 24.42
H:105 [ARG] R:40 [A] 3.92 24.42
H:106 [ARG] R:36 [C] 3.76 R:44 [G] 2.13
H:106 [ARG] R:37 [G] 3.22 R:43 [C] 2.13
H:106 [ARG] R:39 [G] 4.69 R:42 [C] 2.13
H:110 [ARG] R:40 [A] 2.96 base/AA stacks 0.95
H:112 [PHE] R:40 [A] 4.7 1.56

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*Conservation was calculated using Rate4Site
NB: conservation is missing (completly white) for a very small minority of cases in which no homologous sequences were found (e.g. synthetic proteins 7D3J_A & 7EU9_A)

Properties of this interface

Interolog group ID Structure ID Structure description
 UniProt ID
 		ECOD label(s)
 		RFAM label(s)
 		Is ribosome? RCSB PDB link
group111 6B3K_H_R H: Heavy chain of fab bl3-6, Mus musculus (genetically engineered) R: RNA (83-mer),RNA (83-mer), Synthetic construct (genetically engineered) Immunoglobulin/Fibronectin type III/E set domains/PapD-like ✘

Interologs

Total number of interologs for this interface: 4

Interface 1 Interface 2 Percentage conservation
 		Interface TM-score
 		Interface RMSD
 		Percentage identity
 		Common ECOD label(s)
 		Common RFAM label(s)
 		Explore both interfaces
2R8S_H_R 6B3K_H_R 0.15 0.63 3.5 0.0 Immunoglobulin/Fibronectin type III/E set domains/PapD-like compare
6B3K_H_R 6DB8_H_R 0.81 0.72 2.75 0.57 Immunoglobulin/Fibronectin type III/E set domains/PapD-like compare
6B3K_H_R 7MLX_H_R 0.98 0.79 1.18 0.57 Immunoglobulin/Fibronectin type III/E set domains/PapD-like compare
6B3K_H_R 6X5M_h_r 0.99 0.79 1.96 0.71 Immunoglobulin/Fibronectin type III/E set domains/PapD-like compare