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All interfaces > All interologs > Interface groups > group111 > 6DB8_H_R

Interface analysis

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Protein

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Licorice
Surface

RNA

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Licorice
Surface

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Chain
Chain (with hetatm)
Chainbow
Hydrophobicity
Electrostatics (surface only)
Conservation*

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Interface

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Rim - Core

Contacts -

6DB8_H
6DB8_R
Distance
Base Pair
Hbond nuc:res
Base Stacking
Residue conservation
H:30 [PHE] R:24 [A] 3.74 61.69
H:31 [TYR] R:24 [A] 3.03 base:BB 74.27
H:34 [TYR] R:24 [A] 2.61 sugar:BB 51.65
H:35 [SER] R:24 [A] 4.4 49.84
H:38 [HIS] R:26 [A] 3.56 49.98
H:55 [SER] R:26 [A] 4.79 33.75
H:55 [SER] R:27 [C] 3.99 33.75
H:56 [PRO] R:24 [A] 4.5 25.12
H:56 [PRO] R:25 [A] 3.61 R:28 [A] 25.12
H:56 [PRO] R:26 [A] 3.77 25.12
H:56 [PRO] R:27 [C] 3.31 base:BB 25.12
H:56 [PRO] R:28 [A] 4.53 R:25 [A] 25.12
H:57 [TYR] R:24 [A] 3.32 sugar:SC 45.03
H:57 [TYR] R:25 [A] 3.19 R:28 [A] base/AA stacks 45.03
H:57 [TYR] R:28 [A] 3.8 R:25 [A] 45.03
H:58 [SER] R:27 [C] 2.69 base:SC, base:SC 56.09
H:58 [SER] R:28 [A] 4.06 R:25 [A] 56.09
H:60 [SER] R:27 [C] 2.65 base:SC 48.23
H:62 [TYR] R:26 [A] 4.45 13.52
H:62 [TYR] R:27 [C] 3.29 sugar:SC 13.52
H:102 [GLN] R:26 [A] 3.07 base:SC, base:SC 9.64
H:103 [GLY] R:25 [A] 3.33 R:28 [A] 41.44
H:104 [TYR] R:24 [A] 3.25 0.17
H:104 [TYR] R:25 [A] 3.46 R:28 [A] 0.17
H:105 [ARG] R:22 [C] 3.61 R:30 [G] base/AA stacks 30.37
H:105 [ARG] R:23 [G] 3.08 R:29 [C] base:SC 30.37
H:105 [ARG] R:24 [A] 4.67 30.37
H:105 [ARG] R:25 [A] 2.77 R:28 [A] sugar:SC 30.37
H:105 [ARG] R:26 [A] 4.77 30.37
H:106 [ARG] R:22 [C] 4.54 R:30 [G] 1.76
H:106 [ARG] R:23 [G] 2.69 R:29 [C] 1.76
H:106 [ARG] R:24 [A] 4.71 1.76
H:106 [ARG] R:25 [A] 4.49 R:28 [A] 1.76
H:110 [ARG] R:26 [A] 2.94 base/AA stacks 1.23
H:112 [PHE] R:26 [A] 4.83 0.07

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*Conservation was calculated using Rate4Site
NB: conservation is missing (completly white) for a very small minority of cases in which no homologous sequences were found (e.g. synthetic proteins 7D3J_A & 7EU9_A)

Properties of this interface

Interolog group ID Structure ID Structure description
 UniProt ID
 		ECOD label(s)
 		RFAM label(s)
 		Is ribosome? RCSB PDB link
group111 6DB8_H_R H: Fab-heavy chain, Synthetic construct (genetically engineered) R: RNA (60-mer), Synthetic construct (synthetic) Immunoglobulin/Fibronectin type III/E set domains/PapD-like ✘

Interologs

Total number of interologs for this interface: 4

Interface 1 Interface 2 Percentage conservation
 		Interface TM-score
 		Interface RMSD
 		Percentage identity
 		Common ECOD label(s)
 		Common RFAM label(s)
 		Explore both interfaces
6DB8_H_R 6X5M_h_r 0.89 0.88 0.78 0.94 Immunoglobulin/Fibronectin type III/E set domains/PapD-like compare
6DB8_H_R 7MLX_H_R 0.95 0.79 1.5 0.86 Immunoglobulin/Fibronectin type III/E set domains/PapD-like compare
6B3K_H_R 6DB8_H_R 0.81 0.72 2.75 0.57 Immunoglobulin/Fibronectin type III/E set domains/PapD-like compare
6B14_H_R 6DB8_H_R 0.91 0.72 2.52 0.94 Immunoglobulin/Fibronectin type III/E set domains/PapD-like compare