Interface analysis
Style
Protein
CartoonLicorice
Surface
RNA
CartoonLicorice
Surface
Color
StructureStructure (with hetatm)
Chain
Chainbow
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InterfaceRNA
Protein
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Show chains
Interface
show interface as licoriceCommon contacts -
6DB8_H
|
6DB8_R
|
7MLX_H
|
7MLX_R
|
Conserved?
|
---|---|---|---|---|
H:35 [SER] | R:24 [A] | H:35 [SER] | R:41 [A] | ✔ |
H:106 [ARG] | R:22 [C] | H:106 [ARG] | R:39 [A] | ✔ |
H:106 [ARG] | R:23 [G] | H:106 [ARG] | R:40 [G] | ✔ |
H:106 [ARG] | R:25 [A] | H:106 [ARG] | R:42 [A] | ✔ |
H:56 [PRO] | R:25 [A] | H:56 [PRO] | R:42 [A] | ✔ |
H:56 [PRO] | R:26 [A] | H:56 [PRO] | R:43 [A] | ✔ |
H:56 [PRO] | R:27 [C] | H:56 [PRO] | R:44 [C] | ✔ |
H:56 [PRO] | R:28 [A] | H:56 [PRO] | R:45 [A] | ✔ |
H:103 [GLY] | R:25 [A] | H:103 [GLY] | R:42 [A] | ✔ |
H:34 [TYR] | R:24 [A] | H:34 [TYR] | R:41 [A] | ✔ |
H:31 [TYR] | R:24 [A] | H:31 [TYR] | R:41 [A] | ✔ |
H:62 [TYR] | R:26 [A] | H:62 [TYR] | R:43 [A] | ✔ |
H:62 [TYR] | R:27 [C] | H:62 [TYR] | R:44 [C] | ✔ |
H:58 [SER] | R:27 [C] | H:58 [SER] | R:44 [C] | ✔ |
H:58 [SER] | R:28 [A] | H:58 [SER] | R:45 [A] | ✔ |
H:57 [TYR] | R:24 [A] | H:57 [TYR] | R:41 [A] | ✔ |
H:57 [TYR] | R:25 [A] | H:57 [TYR] | R:42 [A] | ✔ |
H:57 [TYR] | R:28 [A] | H:57 [TYR] | R:45 [A] | ✔ |
H:60 [SER] | R:27 [C] | H:60 [SER] | R:44 [C] | ✔ |
H:38 [HIS] | R:26 [A] | H:38 [HIS] | R:43 [A] | ✔ |
H:102 [GLN] | R:26 [A] | H:102 [GLN] | R:43 [A] | ✔ |
H:110 [ARG] | R:26 [A] | H:110 [ARG] | R:43 [A] | ✔ |
H:112 [PHE] | R:26 [A] | H:112 [PHE] | R:43 [A] | ✔ |
H:105 [ARG] | R:22 [C] | H:105 [ARG] | R:39 [A] | ✔ |
H:105 [ARG] | R:23 [G] | H:105 [ARG] | R:40 [G] | ✔ |
H:105 [ARG] | R:25 [A] | H:105 [ARG] | R:42 [A] | ✔ |
H:55 [SER] | R:26 [A] | H:55 [SER] | R:43 [A] | ✔ |
H:55 [SER] | R:27 [C] | H:55 [SER] | R:44 [C] | ✔ |
H:104 [TYR] | R:24 [A] | H:104 [TYR] | R:41 [A] | ✔ |
H:104 [TYR] | R:25 [A] | H:104 [TYR] | R:42 [A] | ✔ |
H:106 [ARG] | R:24 [A] | H:106 [ARG] | R:41 [A] | ❌ 7MLX_H_R |
H:56 [PRO] | R:24 [A] | H:56 [PRO] | R:41 [A] | ❌ 7MLX_H_R |
H:105 [ARG] | R:24 [A] | H:105 [ARG] | R:41 [A] | ❌ 7MLX_H_R |
H:105 [ARG] | R:26 [A] | H:105 [ARG] | R:43 [A] | ❌ 7MLX_H_R |
H:34 [TYR] | R:25 [A] | H:34 [TYR] | R:42 [A] | ❌ 6DB8_H_R |
H:30 [PHE] | R:24 [A] | H:30 [PHE] | R:41 [A] | ❌ 7MLX_H:30 no longer at interface |
H:36 [SER] | R:26 [A] | H:36 [SER] | R:43 [A] | ❌ 6DB8_H:36 no longer at interface |
Properties of this pair
Common ECOD label(s) |
Common RFAM label(s) |
Interface TM-score |
Interface RMSD |
Percentage identity |
Protein TM-score |
RNA TM-score |
Protein coverage |
RNA coverage |
Percentage conservation |
Apolar conservation |
H-bond conservation |
Percentage switching out |
---|---|---|---|---|---|---|---|---|---|---|---|---|
Immunoglobulin/Fibronectin type III/E set domains/PapD-like | 0.79 | 1.5 | 0.86 | 0.96 | 0.28 | 0.94 | 1.0 | 0.95 | 0.85 | 0.69 | 0.29 |
Other pairs involving 6DB8_H_R or 7MLX_H_R
Total number of entries: 9