Interface analysis
Style
Protein
CartoonLicorice
Surface
RNA
CartoonLicorice
Surface
Color
ChainChain (with hetatm)
Chainbow
Hydrophobicity Electrostatics (surface only) Conservation*
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InterfaceRNA
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Interface
show as licoriceshow Accessibility
Rim - Core
Contacts -
| 6U8D_H
|
6U8D_A
|
Distance
|
Base Pair
|
Hbond nuc:res
|
Base Stacking
|
Residue conservation
|
|---|---|---|---|---|---|---|
| H:58 [TYR] | A:164 [U] | 3.33 | 47.27 | |||
| H:58 [TYR] | A:165 [A] | 3.66 | 47.27 | |||
| H:60 [TYR] | A:164 [U] | 3.03 | base:SC | 47.88 | ||
| H:60 [TYR] | A:165 [A] | 2.88 | base:SC | 47.88 | ||
| H:60 [TYR] | A:233 [G] | 3.19 | 47.88 | |||
| H:60 [TYR] | A:237 [C] | 3.9 | A:230 [G] | 47.88 | ||
| H:61 [THR] | A:233 [G] | 2.89 | base:BB, base:BB, base:BB | 61.94 | ||
| H:62 [SER] | A:233 [G] | 3.86 | 9.38 | |||
| H:104 [ARG] | A:163 [G] | 2.93 | 5.75 | |||
| H:104 [ARG] | A:164 [U] | 3.51 | 5.75 | |||
| H:105 [SER] | A:163 [G] | 4.45 | 23.37 | |||
| H:105 [SER] | A:164 [U] | 2.85 | 23.37 | |||
| H:106 [TYR] | A:163 [G] | 3.13 | 11.11 | |||
| H:106 [TYR] | A:164 [U] | 3.41 | base/AA stacks | 11.11 | ||
| H:106 [TYR] | A:231 [G] | 3.41 | A:236 [C] | 11.11 | ||
| H:106 [TYR] | A:232 [C] | 3.24 | A:235 [G] | 11.11 | ||
| H:107 [TYR] | A:163 [G] | 2.63 | sugar:BB | 1.75 | ||
| H:108 [SER] | A:163 [G] | 3.67 | 8.81 | |||
| H:109 [ARG] | A:162 [A] | 2.93 | 6.99 | |||
| H:109 [ARG] | A:163 [G] | 4.71 | 6.99 | |||
| H:110 [TYR] | A:163 [G] | 3.73 | 0.0 |
Export the table of contacts
*Conservation was calculated using Rate4Site
NB: conservation is missing (completly white) for a very small minority of cases in which no homologous sequences were found (e.g. synthetic proteins 7D3J_A & 7EU9_A)
Properties of this interface
| Interolog group ID | Structure ID |
Structure description |
UniProt ID |
ECOD label(s) |
RFAM label(s) |
Is ribosome? | RCSB PDB link |
|---|---|---|---|---|---|---|---|
| group111 | 6U8D_H_A | H: Heavy chain of fab hcv2, Homo sapiens (genetically engineered) A: Jiiiabc RNA (68-mer), Hepacivirus c (synthetic) | Immunoglobulin/Fibronectin type III/E set domains/PapD-like | ✘ |
|
Interologs
Total number of interologs for this interface: 2
| Interface 1 | Interface 2 |
Percentage conservation |
Interface TM-score |
Interface RMSD |
Percentage identity |
Common ECOD label(s) |
Common RFAM label(s) |
Explore both interfaces |
|---|---|---|---|---|---|---|---|---|
| 6U8D_H_A | 6X5M_h_r | 0.28 | 0.62 | 4.03 | 0.09 | Immunoglobulin/Fibronectin type III/E set domains/PapD-like | compare | |
| 6U8D_H_A | 7MLX_H_R | 0.24 | 0.64 | 5.1 | 0.0 | Immunoglobulin/Fibronectin type III/E set domains/PapD-like | compare |