Interface analysis
Style
Protein
CartoonLicorice
Surface
RNA
CartoonLicorice
Surface
Color
StructureStructure (with hetatm)
Chain
Chainbow
View
Focus on
InterfaceRNA
Protein
All
Show chains
Interface
show interface as licoriceCommon contacts -
6U8D_H
|
6U8D_A
|
7MLX_H
|
7MLX_R
|
Conserved?
|
---|---|---|---|---|
H:105 [SER] | A:163 [G] | H:105 [ARG] | R:42 [A] | ✔ |
H:104 [ARG] | A:163 [G] | H:104 [TYR] | R:42 [A] | ✔ |
H:58 [TYR] | A:164 [U] | H:58 [SER] | R:45 [A] | ✔ |
H:105 [SER] | A:164 [U] | H:105 [ARG] | R:45 [A] | ❌ 7MLX_H_R |
H:110 [TYR] | A:163 [G] | H:110 [ARG] | R:42 [A] | ❌ 7MLX_H_R |
H:104 [ARG] | A:164 [U] | H:104 [TYR] | R:45 [A] | ❌ 7MLX_H_R |
H:60 [TYR] | A:164 [U] | H:60 [SER] | R:45 [A] | ❌ 7MLX_H_R |
H:105 [SER] | A:162 [A] | H:105 [ARG] | R:39 [A] | ❌ 6U8D_H_A |
H:60 [TYR] | A:165 [A] | H:60 [SER] | R:46 [C] | ❌ 7MLX_R:46 no longer at interface |
H:58 [TYR] | A:165 [A] | H:58 [SER] | R:46 [C] | ❌ 7MLX_R:46 no longer at interface |
H:109 [ARG] | A:162 [A] | H:109 [GLY] | R:39 [A] | ❌ 7MLX_H:109 no longer at interface |
H:109 [ARG] | A:163 [G] | H:109 [GLY] | R:42 [A] | ❌ 7MLX_H:109 no longer at interface |
H:108 [SER] | A:163 [G] | H:108 [SER] | R:42 [A] | ❌ 7MLX_H:108 no longer at interface |
H:103 [TYR] | A:163 [G] | H:103 [GLY] | R:42 [A] | ❌ 6U8D_H:103 no longer at interface |
H:34 [SER] | A:163 [G] | H:34 [TYR] | R:42 [A] | ❌ 6U8D_H:34 no longer at interface |
H:56 [PRO] | A:163 [G] | H:56 [PRO] | R:42 [A] | ❌ 6U8D_H:56 no longer at interface |
H:56 [PRO] | A:164 [U] | H:56 [PRO] | R:45 [A] | ❌ 6U8D_H:56 no longer at interface |
H:57 [SER] | A:163 [G] | H:57 [TYR] | R:42 [A] | ❌ 6U8D_H:57 no longer at interface |
H:57 [SER] | A:164 [U] | H:57 [TYR] | R:45 [A] | ❌ 6U8D_H:57 no longer at interface |
Properties of this pair
Common ECOD label(s) |
Common RFAM label(s) |
Interface TM-score |
Interface RMSD |
Percentage identity |
Protein TM-score |
RNA TM-score |
Protein coverage |
RNA coverage |
Percentage conservation |
Apolar conservation |
H-bond conservation |
Percentage switching out |
---|---|---|---|---|---|---|---|---|---|---|---|---|
Immunoglobulin/Fibronectin type III/E set domains/PapD-like | 0.64 | 5.1 | 0.00 | 0.76 | 0.3 | 0.55 | 0.43 | 0.24 | 0.14 | 0.00 | 0.69 |
Other pairs involving 6U8D_H_A or 7MLX_H_R
Total number of entries: 7
Interface 1 | Interface 2 |
Percentage conservation |
Interface TM-score |
Interface RMSD |
Percentage identity |
Common ECOD label(s) |
Common RFAM label(s) |
Explore both interfaces |
---|---|---|---|---|---|---|---|---|
6X5M_h_r | 7MLX_H_R | 0.99 | 0.89 | 1.01 | 0.86 | Immunoglobulin/Fibronectin type III/E set domains/PapD-like | compare | |
6DB8_H_R | 7MLX_H_R | 0.95 | 0.79 | 1.5 | 0.86 | Immunoglobulin/Fibronectin type III/E set domains/PapD-like | compare | |
6B3K_H_R | 7MLX_H_R | 0.98 | 0.79 | 1.18 | 0.57 | Immunoglobulin/Fibronectin type III/E set domains/PapD-like | compare | |
6U8D_H_A | 6X5M_h_r | 0.28 | 0.62 | 4.03 | 0.09 | Immunoglobulin/Fibronectin type III/E set domains/PapD-like | compare | |
6U8D_H_A | 7MLX_H_R | 0.24 | 0.64 | 5.1 | 0.0 | Immunoglobulin/Fibronectin type III/E set domains/PapD-like | compare | |
6B14_H_R | 7MLX_H_R | 0.98 | 0.79 | 1.24 | 0.86 | Immunoglobulin/Fibronectin type III/E set domains/PapD-like | compare | |
2R8S_H_R | 7MLX_H_R | 0.19 | 0.75 | 3.05 | 0.0 | Immunoglobulin/Fibronectin type III/E set domains/PapD-like | compare |