Interface analysis
Style
Protein
CartoonLicorice
Surface
RNA
CartoonLicorice
Surface
Color
ChainChain (with hetatm)
Chainbow
Hydrophobicity Electrostatics (surface only) Conservation*
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InterfaceRNA
Protein
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Interface
show as licoriceshow Accessibility
Rim - Core
Contacts -
| 6X5M_h
|
6X5M_r
|
Distance
|
Base Pair
|
Hbond nuc:res
|
Base Stacking
|
Residue conservation
|
|---|---|---|---|---|---|---|
| h:34 [TYR] | r:15 [A] | 3.15 | sugar:BB | base/AA stacks | 68.53 | |
| h:34 [TYR] | r:16 [A] | 4.57 | r:19 [A] | 68.53 | ||
| h:36 [SER] | r:17 [A] | 4.51 | 5.83 | |||
| h:38 [HIS] | r:17 [A] | 3.71 | 32.49 | |||
| h:55 [SER] | r:17 [A] | 4.34 | 33.09 | |||
| h:55 [SER] | r:18 [C] | 3.85 | 33.09 | |||
| h:56 [PRO] | r:16 [A] | 4.23 | r:19 [A] | 32.23 | ||
| h:56 [PRO] | r:17 [A] | 3.95 | 32.23 | |||
| h:56 [PRO] | r:18 [C] | 3.34 | base:BB | 32.23 | ||
| h:56 [PRO] | r:19 [A] | 4.26 | r:16 [A] | 32.23 | ||
| h:57 [TYR] | r:15 [A] | 2.97 | sugar:SC | 42.94 | ||
| h:57 [TYR] | r:16 [A] | 3.3 | r:19 [A] | base/AA stacks | 42.94 | |
| h:57 [TYR] | r:19 [A] | 3.47 | r:16 [A] | 42.94 | ||
| h:58 [SER] | r:18 [C] | 2.97 | 51.03 | |||
| h:58 [SER] | r:19 [A] | 3.49 | r:16 [A] | 51.03 | ||
| h:60 [SER] | r:18 [C] | 2.95 | base:SC | 62.83 | ||
| h:62 [TYR] | r:17 [A] | 4.15 | 3.29 | |||
| h:62 [TYR] | r:18 [C] | 3.43 | sugar:SC | 3.29 | ||
| h:102 [GLN] | r:17 [A] | 2.68 | base:SC, base:SC | 3.1 | ||
| h:103 [GLY] | r:16 [A] | 4.06 | r:19 [A] | 30.29 | ||
| h:104 [TYR] | r:15 [A] | 3.7 | 2.13 | |||
| h:104 [TYR] | r:16 [A] | 3.32 | r:19 [A] | 2.13 | ||
| h:105 [ARG] | r:12 [U] | 4.88 | r:22 [A] | 24.42 | ||
| h:105 [ARG] | r:13 [C] | 2.43 | r:21 [G] | 24.42 | ||
| h:105 [ARG] | r:14 [G] | 2.56 | r:20 [C] | 24.42 | ||
| h:105 [ARG] | r:16 [A] | 3.05 | r:19 [A] | 24.42 | ||
| h:106 [ARG] | r:13 [C] | 3.2 | r:21 [G] | 2.13 | ||
| h:106 [ARG] | r:14 [G] | 3.36 | r:20 [C] | 2.13 | ||
| h:106 [ARG] | r:16 [A] | 4.59 | r:19 [A] | 2.13 | ||
| h:110 [ARG] | r:17 [A] | 2.94 | base/AA stacks | 0.95 | ||
| h:112 [PHE] | r:17 [A] | 4.61 | 1.56 |
Export the table of contacts
*Conservation was calculated using Rate4Site
NB: conservation is missing (completly white) for a very small minority of cases in which no homologous sequences were found (e.g. synthetic proteins 7D3J_A & 7EU9_A)
Properties of this interface
| Interolog group ID | Structure ID |
Structure description |
UniProt ID |
ECOD label(s) |
RFAM label(s) |
Is ribosome? | RCSB PDB link |
|---|---|---|---|---|---|---|---|
| group111 | 6X5M_h_r | h: Heavy chain fab bl-3 6, Mus musculus (genetically engineered) r: Ggpan RNA (39-mer), Synthetic construct (synthetic) | Immunoglobulin/Fibronectin type III/E set domains/PapD-like | ✘ |
|
Interologs
Total number of interologs for this interface: 5
| Interface 1 | Interface 2 |
Percentage conservation |
Interface TM-score |
Interface RMSD |
Percentage identity |
Common ECOD label(s) |
Common RFAM label(s) |
Explore both interfaces |
|---|---|---|---|---|---|---|---|---|
| 6U8D_H_A | 6X5M_h_r | 0.28 | 0.62 | 4.03 | 0.09 | Immunoglobulin/Fibronectin type III/E set domains/PapD-like | compare | |
| 6B3K_H_R | 6X5M_h_r | 0.99 | 0.79 | 1.96 | 0.71 | Immunoglobulin/Fibronectin type III/E set domains/PapD-like | compare | |
| 6X5M_h_r | 7MLX_H_R | 0.99 | 0.89 | 1.01 | 0.86 | Immunoglobulin/Fibronectin type III/E set domains/PapD-like | compare | |
| 6DB8_H_R | 6X5M_h_r | 0.89 | 0.88 | 0.78 | 0.94 | Immunoglobulin/Fibronectin type III/E set domains/PapD-like | compare | |
| 6B14_H_R | 6X5M_h_r | 0.98 | 0.79 | 2.12 | 1.0 | Immunoglobulin/Fibronectin type III/E set domains/PapD-like | compare |