RNAprotDB

Interface analysis

Contacts -

7MLX_H	7MLX_R	Distance	Base Pair	Hbond nuc:res	Base Stacking	Residue conservation
H:31 [TYR]	R:41 [A]	4.87				69.81
H:34 [TYR]	R:41 [A]	2.89		sugar:BB	base/AA stacks	47.57
H:34 [TYR]	R:42 [A]	4.39	R:45 [A]			47.57
H:35 [SER]	R:41 [A]	4.95				47.33
H:36 [SER]	R:43 [A]	4.44				1.66
H:38 [HIS]	R:43 [A]	3.65				44.74
H:55 [SER]	R:43 [A]	4.55				2.25
H:55 [SER]	R:44 [C]	3.76				2.25
H:56 [PRO]	R:42 [A]	3.92	R:45 [A]			45.67
H:56 [PRO]	R:43 [A]	3.94				45.67
H:56 [PRO]	R:44 [C]	3.2		base:BB		45.67
H:56 [PRO]	R:45 [A]	4.47	R:42 [A]			45.67
H:57 [TYR]	R:41 [A]	3.01		sugar:SC		51.43
H:57 [TYR]	R:42 [A]	3.12	R:45 [A]		base/AA stacks	51.43
H:57 [TYR]	R:45 [A]	3.41	R:42 [A]			51.43
H:58 [SER]	R:44 [C]	2.62		base:SC		38.57
H:58 [SER]	R:45 [A]	3.64	R:42 [A]			38.57
H:60 [SER]	R:44 [C]	2.55		base:SC		61.46
H:62 [TYR]	R:43 [A]	4.93				0.99
H:62 [TYR]	R:44 [C]	3.45				0.99
H:102 [GLN]	R:43 [A]	2.94		base:SC, base:SC		0.96
H:103 [GLY]	R:42 [A]	3.98	R:45 [A]			35.89
H:104 [TYR]	R:41 [A]	3.58				2.82
H:104 [TYR]	R:42 [A]	3.31	R:45 [A]			2.82
H:105 [ARG]	R:39 [A]	3.16	R:47 [U]			43.17
H:105 [ARG]	R:40 [G]	2.67	R:46 [C]			43.17
H:105 [ARG]	R:42 [A]	2.87	R:45 [A]			43.17
H:106 [ARG]	R:39 [A]	3.88	R:47 [U]			0.42
H:106 [ARG]	R:40 [G]	3.63	R:46 [C]			0.42
H:106 [ARG]	R:42 [A]	4.69	R:45 [A]			0.42
H:110 [ARG]	R:43 [A]	3.01			base/AA stacks	0.0
H:112 [PHE]	R:43 [A]	4.77				1.43

Export the table of contacts

*Conservation was calculated using Rate4Site
NB: conservation is missing (completly white) for a very small minority of cases in which no homologous sequences were found (e.g. synthetic proteins 7D3J_A & 7EU9_A)

Properties of this interface

Interolog group ID	Structure ID	Structure description	UniProt ID	ECOD label(s)	RFAM label(s)	Is ribosome?	RCSB PDB link
group111	7MLX_H_R	H: Bl3-6 fab heavy chain, Homo sapiens (genetically engineered) R: RNA (65-mer), Severe acute respiratory syndrome coronavirus 2 (genetically engineered)		Immunoglobulin/Fibronectin type III/E set domains/PapD-like		✘

Interologs

Interface 1	Interface 2	Percentage conservation	Interface TM-score	Interface RMSD	Percentage identity	Common ECOD label(s)	Explore both interfaces
2R8S_H_R	7MLX_H_R	0.19	0.75	3.05	0.0	Immunoglobulin/Fibronectin type III/E set domains/PapD-like	compare
6B14_H_R	7MLX_H_R	0.98	0.79	1.24	0.86	Immunoglobulin/Fibronectin type III/E set domains/PapD-like	compare
6B3K_H_R	7MLX_H_R	0.98	0.79	1.18	0.57	Immunoglobulin/Fibronectin type III/E set domains/PapD-like	compare
6DB8_H_R	7MLX_H_R	0.95	0.79	1.5	0.86	Immunoglobulin/Fibronectin type III/E set domains/PapD-like	compare
6U8D_H_A	7MLX_H_R	0.24	0.64	5.1	0.0	Immunoglobulin/Fibronectin type III/E set domains/PapD-like	compare
6X5M_h_r	7MLX_H_R	0.99	0.89	1.01	0.86	Immunoglobulin/Fibronectin type III/E set domains/PapD-like	compare

Interface 1

Interface 2

Percentage conservation

Interface TM-score

Interface RMSD

Percentage identity

Common ECOD label(s)

Common RFAM label(s)

Explore both interfaces

2R8S_H_R

7MLX_H_R

0.19