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All interfaces > All interologs > Interface groups > group112 > 4Y4O_1g_1a

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Licorice
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Licorice
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Chain
Chain (with hetatm)
Chainbow
Hydrophobicity
Electrostatics (surface only)
Conservation*

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Rim - Core

Contacts -

4Y4O_1g
4Y4O_1a
Distance
Base Pair
Hbond nuc:res
Base Stacking
Residue conservation
1g:2 [ALA] 1a:935 [A] 4.9 1a:1380 [U] 57.17
1g:2 [ALA] 1a:937 [A] 4.88 1a:1378 [C] 57.17
1g:2 [ALA] 1a:1377 [A] 3.06 sugar:BB 57.17
1g:2 [ALA] 1a:1378 [C] 3.97 1a:937 [A] 57.17
1g:2 [ALA] 1a:1379 [G] 3.43 1a:936 [C] base:BB 57.17
1g:2 [ALA] 1a:1380 [U] 3.36 1a:935 [A] 57.17
1g:3 [ARG] 1a:932 [C] 3.4 1a:1385 [G] base/AA stacks 83.93
1g:3 [ARG] 1a:933 [G] 2.57 1a:1384 [C] base:SC, base:SC 83.93
1g:3 [ARG] 1a:935 [A] 3.21 1a:1380 [U] base/AA stacks 83.93
1g:3 [ARG] 1a:1379 [G] 4.98 1a:936 [C] 83.93
1g:3 [ARG] 1a:1380 [U] 2.88 1a:935 [A] sugar:SC base/AA stacks 83.93
1g:3 [ARG] 1a:1383 [C] 4.54 83.93
1g:3 [ARG] 1a:1384 [C] 4.32 1a:933 [G] 83.93
1g:3 [ARG] 1a:1385 [G] 4.62 1a:932 [C] 83.93
1g:4 [ARG] 1a:932 [C] 3.3 1a:1385 [G] 66.75
1g:4 [ARG] 1a:933 [G] 3.34 1a:1384 [C] 66.75
1g:4 [ARG] 1a:1092 [A] 3.4 66.75
1g:4 [ARG] 1a:1093 [A] 3.53 66.75
1g:5 [ARG] 1a:1378 [C] 4.23 1a:937 [A] 4.64
1g:6 [ARG] 1a:1378 [C] 3.76 1a:937 [A] 22.79
1g:6 [ARG] 1a:1379 [G] 3.44 1a:936 [C] 22.79
1g:7 [ALA] 1a:1377 [A] 3.72 15.44
1g:7 [ALA] 1a:1378 [C] 3.61 1a:937 [A] 15.44
1g:8 [GLU] 1a:1377 [A] 4.51 4.61
1g:10 [ARG] 1a:1346 [A] 2.91 1a:1375 [A] sugar:SC base/AA stacks 62.72
1g:10 [ARG] 1a:1375 [A] 4.24 1a:1346 [A] 62.72
1g:10 [ARG] 1a:1376 [U] 2.83 1a:1345 [U] base:SC, base:SC 62.72
1g:10 [ARG] 1a:1377 [A] 4.46 62.72
1g:12 [LEU] 1a:1375 [A] 3.64 1a:1346 [A] 51.17
1g:25 [ALA] 1a:1375 [A] 4.73 1a:1346 [A] 72.71
1g:28 [ASN] 1a:1374 [A] 3.26 1a:1348 [U] 85.48
1g:28 [ASN] 1a:1375 [A] 3.2 1a:1346 [A] 85.48
1g:29 [LYS] 1a:939 [G] 3.86 1a:1344 [C] 0.22
1g:29 [LYS] 1a:940 [C] 2.67 1a:1343 [G] 0.22
1g:29 [LYS] 1a:1374 [A] 4.86 1a:1348 [U] 0.22
1g:29 [LYS] 1a:1375 [A] 3.23 1a:1346 [A] sugar:SC 0.22
1g:30 [ILE] 1a:1240 [U] 2.7 base:BB 65.58
1g:31 [MET] 1a:1240 [U] 4.82 87.74
1g:31 [MET] 1a:1373 [G] 3.96 1a:1349 [A] 87.74
1g:31 [MET] 1a:1374 [A] 3.49 1a:1348 [U] 87.74
1g:32 [ARG] 1a:1240 [U] 3.29 base:BB, sugar:SC base/AA stacks 62.36
1g:33 [ASP] 1a:1350 [A] 3.07 1a:1372 [U] sugar:SC 57.54
1g:33 [ASP] 1a:1351 [U] 3.19 1a:1371 [G] sugar:BB 57.54
1g:33 [ASP] 1a:1372 [U] 4.31 1a:1350 [A] 57.54
1g:34 [GLY] 1a:1350 [A] 4.13 1a:1372 [U] 98.95
1g:34 [GLY] 1a:1372 [U] 2.87 1a:1350 [A] sugar:BB 98.95
1g:34 [GLY] 1a:1373 [G] 3.56 1a:1349 [A] 98.95
1g:35 [LYS] 1a:1241 [G] 2.9 1a:1296 [C] 86.21
1g:35 [LYS] 1a:1289 [A] 3.34 1a:1248 [A] 86.21
1g:35 [LYS] 1a:1290 [G] 2.89 1a:1247 [U] 86.21
1g:35 [LYS] 1a:1372 [U] 4.59 1a:1350 [A] 86.21
1g:36 [LYS] 1a:1372 [U] 4.65 1a:1350 [A] 88.42
1g:36 [LYS] 1a:1373 [G] 3.64 1a:1349 [A] 88.42
1g:36 [LYS] 1a:1374 [A] 2.96 1a:1348 [U] 88.42
1g:37 [ASN] 1a:1290 [G] 3.35 1a:1247 [U] 54.25
1g:37 [ASN] 1a:1291 [G] 2.59 1a:1246 [C] 54.25
1g:38 [LEU] 1a:1240 [U] 3.23 47.62
1g:38 [LEU] 1a:1241 [G] 3.87 1a:1296 [C] 47.62
1g:38 [LEU] 1a:1291 [G] 4.79 1a:1246 [C] 47.62
1g:41 [ARG] 1a:1291 [G] 3.02 1a:1246 [C] 48.92
1g:41 [ARG] 1a:1292 [U] 2.58 1a:1245 [A] 48.92
1g:42 [ILE] 1a:1240 [U] 3.54 81.46
1g:76 [ARG] 1a:1378 [C] 3.18 1a:937 [A] 70.87
1g:80 [VAL] 1a:693 [G] 4.19 57.57
1g:81 [GLY] 1a:693 [G] 4.02 79.54
1g:82 [GLY] 1a:693 [G] 3.01 base:BB, sugar:BB 81.62
1g:83 [ALA] 1a:693 [G] 4.04 57.57
1g:83 [ALA] 1a:694 [A] 4.3 57.57
1g:85 [TYR] 1a:693 [G] 4.35 63.21
1g:85 [TYR] 1a:694 [A] 3.34 63.21
1g:94 [ARG] 1a:1375 [A] 4.71 1a:1346 [A] 50.7
1g:94 [ARG] 1a:1376 [U] 2.66 1a:1345 [U] 50.7
1g:94 [ARG] 1a:1377 [A] 2.8 50.7
1g:95 [ARG] 1a:938 [A] 3.22 1a:934 [C] 82.88
1g:95 [ARG] 1a:939 [G] 3.39 1a:1344 [C] 82.88
1g:95 [ARG] 1a:1377 [A] 4.99 82.88
1g:98 [SER] 1a:1376 [U] 3.03 1a:1345 [U] 59.14
1g:99 [LEU] 1a:939 [G] 4.12 1a:1344 [C] 41.89
1g:102 [ARG] 1a:938 [A] 4.83 1a:934 [C] 79.34
1g:102 [ARG] 1a:939 [G] 3.0 1a:1344 [C] 79.34
1g:102 [ARG] 1a:940 [C] 2.93 1a:1343 [G] 79.34
1g:102 [ARG] 1a:1375 [A] 4.47 1a:1346 [A] 79.34
1g:102 [ARG] 1a:1376 [U] 4.11 1a:1345 [U] 79.34
1g:105 [VAL] 1a:1240 [U] 4.01 66.54
1g:109 [ASN] 1a:1240 [U] 3.15 base:SC 58.65
1g:114 [ARG] 1a:1239 [A] 2.37 1a:1299 [A] sugar:BB 42.95
1g:114 [ARG] 1a:1240 [U] 3.86 42.95
1g:114 [ARG] 1a:1297 [C] 2.29 base:SC, sugar:SC 42.95
1g:114 [ARG] 1a:1298 [C] 2.94 base/AA stacks 42.95
1g:115 [ARG] 1a:1239 [A] 4.44 1a:1299 [A] 41.76
1g:115 [ARG] 1a:1240 [U] 3.24 41.76
1g:116 [ALA] 1a:1239 [A] 4.7 1a:1299 [A] 57.07
1g:116 [ALA] 1a:1240 [U] 2.41 57.07
1g:117 [ALA] 1a:1240 [U] 4.7 6.72
1g:119 [ARG] 1a:1239 [A] 4.98 1a:1299 [A] 50.78
1g:119 [ARG] 1a:1240 [U] 2.58 50.78
1g:120 [ILE] 1a:1240 [U] 4.87 88.98
1g:156 [TRP] 1a:1378 [C] 4.58 1a:937 [A] 46.12

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*Conservation was calculated using Rate4Site
NB: conservation is missing (completly white) for a very small minority of cases in which no homologous sequences were found (e.g. synthetic proteins 7D3J_A & 7EU9_A)

Properties of this interface

Interolog group ID Structure ID Structure description
 UniProt ID
 		ECOD label(s)
 		RFAM label(s)
 		Is ribosome? RCSB PDB link
group112 4Y4O_1g_1a 1g: 30s ribosomal protein s7, Thermus thermophilus (strain hb8 / atcc 27634 / dsm 579) (natural) 1a: 16s ribosomal RNA, Thermus thermophilus hb8 (natural) P17291 Ribosomal protein S7 Bacterial small subunit ribosomal RNA ✔

Interologs

Total number of interologs for this interface: 6

Interface 1 Interface 2 Percentage conservation
 		Interface TM-score
 		Interface RMSD
 		Percentage identity
 		Common ECOD label(s)
 		Common RFAM label(s)
 		Explore both interfaces
4Y4O_1g_1a 7O7Y_Ae_A2 0.45 0.93 2.9 0.21 Ribosomal protein S7 compare
4Y4O_1g_1a 6S0X_g_a 0.59 0.95 3.23 0.23 Ribosomal protein S7 Bacterial small subunit ribosomal RNA compare
4Y4O_1g_1a 7RYG_g_a 0.21 0.88 6.23 0.19 Ribosomal protein S7 Bacterial small subunit ribosomal RNA compare
4Y4O_1g_1a 4YBB_AG_AA 0.76 0.96 4.23 0.43 Ribosomal protein S7 Bacterial small subunit ribosomal RNA compare
4Y4O_1g_1a 7K00_G_A 0.78 0.98 1.18 0.45 Ribosomal protein S7 Bacterial small subunit ribosomal RNA compare
4W2F_AG_AA 4Y4O_1g_1a 0.95 1.0 0.97 0.93 Ribosomal protein S7 Bacterial small subunit ribosomal RNA compare