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All interfaces > All interologs > Interface groups > group112 > 4YBB_AG_AA

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Licorice
Surface

RNA

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Licorice
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Chain
Chain (with hetatm)
Chainbow
Hydrophobicity
Electrostatics (surface only)
Conservation*

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Rim - Core

Contacts -

4YBB_AG
4YBB_AA
Distance
Base Pair
Hbond nuc:res
Base Stacking
Residue conservation
AG:2 [PRO] AA:935 [A] 4.54 AA:1380 [U] 27.57
AG:2 [PRO] AA:936 [C] 3.94 AA:1379 [G] 27.57
AG:2 [PRO] AA:937 [A] 3.77 AA:1378 [C] 27.57
AG:2 [PRO] AA:1377 [A] 3.1 27.57
AG:2 [PRO] AA:1378 [C] 3.71 AA:937 [A] 27.57
AG:2 [PRO] AA:1379 [G] 3.11 AA:936 [C] 27.57
AG:2 [PRO] AA:1380 [U] 3.48 AA:935 [A] base:BB 27.57
AG:3 [ARG] AA:932 [C] 3.13 AA:1385 [G] base/AA stacks 68.7
AG:3 [ARG] AA:933 [G] 2.49 AA:1384 [C] base:SC, base:SC 68.7
AG:3 [ARG] AA:935 [A] 3.0 AA:1380 [U] base/AA stacks 68.7
AG:3 [ARG] AA:1379 [G] 4.79 AA:936 [C] 68.7
AG:3 [ARG] AA:1380 [U] 3.12 AA:935 [A] base/AA stacks 68.7
AG:3 [ARG] AA:1384 [C] 4.83 AA:933 [G] 68.7
AG:4 [ARG] AA:932 [C] 3.25 AA:1385 [G] 49.65
AG:4 [ARG] AA:933 [G] 4.35 AA:1384 [C] 49.65
AG:4 [ARG] AA:1091 [U] 2.89 49.65
AG:4 [ARG] AA:1092 [A] 3.27 49.65
AG:4 [ARG] AA:1093 [A] 2.94 49.65
AG:5 [ARG] AA:1345 [U] 4.25 AA:1376 [U] 16.65
AG:5 [ARG] AA:1377 [A] 4.93 16.65
AG:6 [VAL] AA:1378 [C] 4.87 AA:937 [A] 9.6
AG:6 [VAL] AA:1379 [G] 4.4 AA:936 [C] 9.6
AG:7 [ILE] AA:1377 [A] 3.24 11.94
AG:7 [ILE] AA:1378 [C] 4.68 AA:937 [A] 11.94
AG:10 [ARG] AA:1346 [A] 3.07 AA:1375 [A] sugar:SC base/AA stacks 63.09
AG:10 [ARG] AA:1375 [A] 3.76 AA:1346 [A] 63.09
AG:10 [ARG] AA:1376 [U] 3.53 AA:1345 [U] base:SC 63.09
AG:12 [ILE] AA:1375 [A] 3.85 AA:1346 [A] 32.0
AG:24 [ALA] AA:1375 [A] 4.76 AA:1346 [A] 27.59
AG:25 [LYS] AA:1375 [A] 4.82 AA:1346 [A] 80.84
AG:28 [ASN] AA:1374 [A] 2.82 AA:1348 [U] sugar:BB 89.25
AG:28 [ASN] AA:1375 [A] 2.79 AA:1346 [A] 89.25
AG:29 [ILE] AA:1374 [A] 4.73 AA:1348 [U] 24.08
AG:29 [ILE] AA:1375 [A] 4.38 AA:1346 [A] 24.08
AG:29 [ILE] AA:1376 [U] 4.92 AA:1345 [U] 24.08
AG:30 [LEU] AA:1240 [U] 3.29 base:BB 69.54
AG:31 [MET] AA:1373 [G] 3.16 AA:1349 [A] 89.38
AG:31 [MET] AA:1374 [A] 3.26 AA:1348 [U] 89.38
AG:32 [VAL] AA:1240 [U] 3.47 63.93
AG:33 [ASP] AA:1350 [A] 2.41 AA:1372 [U] sugar:SC 55.74
AG:33 [ASP] AA:1351 [U] 3.21 AA:1371 [G] 55.74
AG:33 [ASP] AA:1372 [U] 4.14 AA:1350 [A] 55.74
AG:34 [GLY] AA:1349 [A] 4.69 AA:1373 [G] 98.85
AG:34 [GLY] AA:1350 [A] 3.8 AA:1372 [U] 98.85
AG:34 [GLY] AA:1372 [U] 2.77 AA:1350 [A] sugar:BB 98.85
AG:34 [GLY] AA:1373 [G] 3.2 AA:1349 [A] sugar:BB 98.85
AG:35 [LYS] AA:1241 [G] 3.16 AA:1296 [C] 88.88
AG:35 [LYS] AA:1289 [A] 2.93 AA:1248 [A] 88.88
AG:35 [LYS] AA:1290 [G] 3.15 AA:1247 [U] 88.88
AG:35 [LYS] AA:1351 [U] 4.52 AA:1371 [G] 88.88
AG:35 [LYS] AA:1372 [U] 4.65 AA:1350 [A] 88.88
AG:36 [LYS] AA:1372 [U] 4.41 AA:1350 [A] 90.28
AG:36 [LYS] AA:1373 [G] 3.48 AA:1349 [A] 90.28
AG:36 [LYS] AA:1374 [A] 2.92 AA:1348 [U] 90.28
AG:37 [SER] AA:1290 [G] 2.87 AA:1247 [U] 59.92
AG:37 [SER] AA:1291 [U] 2.67 AA:1246 [A] 59.92
AG:38 [THR] AA:1240 [U] 3.96 base:SC 46.59
AG:38 [THR] AA:1290 [G] 3.89 AA:1247 [U] 46.59
AG:38 [THR] AA:1291 [U] 3.54 AA:1246 [A] 46.59
AG:39 [ALA] AA:1240 [U] 4.46 98.33
AG:41 [SER] AA:1291 [U] 4.2 AA:1246 [A] 51.04
AG:42 [ILE] AA:1240 [U] 3.26 84.44
AG:76 [LYS] AA:937 [A] 2.38 AA:1378 [C] sugar:SC 66.14
AG:76 [LYS] AA:938 [A] 2.94 AA:934 [C] 66.14
AG:76 [LYS] AA:1378 [C] 4.16 AA:937 [A] 66.14
AG:78 [ARG] AA:1381 [U] 3.62 64.95
AG:79 [ARG] AA:1381 [U] 2.39 base:BB, sugar:BB 84.32
AG:79 [ARG] AA:1382 [C] 3.24 sugar:SC 84.32
AG:80 [VAL] AA:1381 [U] 4.06 55.02
AG:80 [VAL] AA:1382 [C] 4.94 55.02
AG:95 [ARG] AA:938 [A] 3.23 AA:934 [C] 84.87
AG:95 [ARG] AA:939 [G] 3.11 AA:1344 [C] 84.87
AG:95 [ARG] AA:1376 [U] 4.97 AA:1345 [U] 84.87
AG:95 [ARG] AA:1377 [A] 4.59 84.87
AG:98 [ALA] AA:1376 [U] 3.44 AA:1345 [U] 57.43
AG:99 [LEU] AA:939 [G] 3.85 AA:1344 [C] 56.58
AG:102 [ARG] AA:939 [G] 2.89 AA:1344 [C] 83.05
AG:102 [ARG] AA:940 [C] 3.23 AA:1343 [G] 83.05
AG:102 [ARG] AA:1375 [A] 4.39 AA:1346 [A] 83.05
AG:102 [ARG] AA:1376 [U] 3.89 AA:1345 [U] 83.05
AG:105 [VAL] AA:1240 [U] 4.84 69.25
AG:106 [GLU] AA:940 [C] 3.78 AA:1343 [G] 36.7
AG:109 [ARG] AA:1238 [A] 4.85 AA:1301 [U] 71.66
AG:109 [ARG] AA:1239 [A] 2.78 AA:1299 [A] 71.66
AG:109 [ARG] AA:1240 [U] 2.88 71.66
AG:112 [GLY] AA:1298 [U] 4.16 AA:1297 [G] 45.26
AG:113 [ASP] AA:1298 [U] 4.25 AA:1297 [G] 50.77
AG:114 [LYS] AA:1239 [A] 3.39 AA:1299 [A] 49.63
AG:114 [LYS] AA:1297 [G] 2.95 AA:1298 [U] sugar:SC 49.63
AG:114 [LYS] AA:1298 [U] 2.85 AA:1297 [G] base:BB 49.63
AG:115 [SER] AA:1239 [A] 3.76 AA:1299 [A] 48.43
AG:115 [SER] AA:1240 [U] 3.42 48.43
AG:115 [SER] AA:1297 [G] 4.85 AA:1298 [U] 48.43
AG:115 [SER] AA:1298 [U] 4.93 AA:1297 [G] 48.43
AG:116 [MET] AA:1239 [A] 4.71 AA:1299 [A] 71.23
AG:116 [MET] AA:1240 [U] 2.87 71.23
AG:117 [ALA] AA:1240 [U] 4.68 2.99
AG:119 [ARG] AA:1239 [A] 4.79 AA:1299 [A] 56.81
AG:119 [ARG] AA:1240 [U] 4.92 56.81

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*Conservation was calculated using Rate4Site
NB: conservation is missing (completly white) for a very small minority of cases in which no homologous sequences were found (e.g. synthetic proteins 7D3J_A & 7EU9_A)

Properties of this interface

Interolog group ID Structure ID Structure description
 UniProt ID
 		ECOD label(s)
 		RFAM label(s)
 		Is ribosome? RCSB PDB link
group112 4YBB_AG_AA AG: 30s ribosomal protein s7, Escherichia coli (strain k12) (natural) AA: 16s rRNA, Escherichia coli k-12 (natural) P02359 Ribosomal protein S7 Bacterial small subunit ribosomal RNA ✔

Interologs

Total number of interologs for this interface: 6

Interface 1 Interface 2 Percentage conservation
 		Interface TM-score
 		Interface RMSD
 		Percentage identity
 		Common ECOD label(s)
 		Common RFAM label(s)
 		Explore both interfaces
4YBB_AG_AA 7RYG_g_a 0.41 0.96 4.99 0.31 Ribosomal protein S7 Bacterial small subunit ribosomal RNA compare
4YBB_AG_AA 7O7Y_Ae_A2 0.47 0.9 4.12 0.19 Ribosomal protein S7 compare
4YBB_AG_AA 6S0X_g_a 0.72 0.97 3.42 0.54 Ribosomal protein S7 Bacterial small subunit ribosomal RNA compare
4YBB_AG_AA 7K00_G_A 0.76 0.97 4.0 0.6 Ribosomal protein S7 Bacterial small subunit ribosomal RNA compare
4Y4O_1g_1a 4YBB_AG_AA 0.76 0.96 4.23 0.43 Ribosomal protein S7 Bacterial small subunit ribosomal RNA compare
4W2F_AG_AA 4YBB_AG_AA 0.82 0.96 3.89 0.45 Ribosomal protein S7 Bacterial small subunit ribosomal RNA compare