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All interfaces > All interologs > Interface groups > group113 > 1DFU_P_M,N

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Licorice
Surface

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Licorice
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Chain
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Hydrophobicity
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Conservation*

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Rim - Core

Contacts -

1DFU_P
1DFU_M,N
Distance
Base Pair
Hbond nuc:res
Base Stacking
Residue conservation
P:9 [ARG] N:184 [G] 3.48 M:101 [A] 96.75
P:9 [ARG] N:185 [G] 2.79 M:100 [G] 96.75
P:11 [GLU] M:95 [U] 4.93 N:190 [G] 31.15
P:12 [GLN] N:183 [U] 4.91 M:102 [G] 40.29
P:12 [GLN] N:184 [G] 3.24 M:101 [A] 40.29
P:12 [GLN] N:185 [G] 3.77 M:100 [G] 40.29
P:13 [GLY] M:98 [G] 3.42 N:187 [A] 92.07
P:13 [GLY] N:184 [G] 4.9 M:101 [A] 92.07
P:13 [GLY] N:185 [G] 2.83 M:100 [G] 92.07
P:13 [GLY] N:186 [U] 4.28 M:99 [A] 92.07
P:14 [LYS] M:97 [C] 4.56 N:188 [G] 81.48
P:14 [LYS] M:98 [G] 3.2 N:187 [A] base:BB 81.48
P:14 [LYS] N:186 [U] 3.56 M:99 [A] 81.48
P:14 [LYS] N:187 [A] 3.7 M:98 [G] 81.48
P:14 [LYS] N:188 [G] 2.93 M:97 [C] base:SC, base:SC 81.48
P:14 [LYS] N:189 [U] 2.97 M:96 [G] base:SC 81.48
P:15 [GLY] M:94 [A] 4.68 N:191 [U] 59.86
P:17 [SER] N:185 [G] 3.19 M:100 [G] 78.74
P:17 [SER] N:186 [U] 3.45 M:99 [A] 78.74
P:18 [ARG] M:92 [C] 3.22 N:193 [G] 83.74
P:18 [ARG] M:93 [C] 3.15 N:192 [G] 83.74
P:18 [ARG] N:186 [U] 4.43 M:99 [A] 83.74
P:18 [ARG] N:187 [A] 3.02 M:98 [G] 83.74
P:18 [ARG] N:188 [G] 4.78 M:97 [C] 83.74
P:19 [ARG] M:93 [C] 5.0 N:192 [G] 66.66
P:19 [ARG] M:94 [A] 2.65 N:191 [U] 66.66
P:19 [ARG] M:95 [U] 2.73 N:190 [G] 66.66
P:21 [ARG] N:185 [G] 2.99 M:100 [G] 98.98
P:21 [ARG] N:186 [U] 2.9 M:99 [A] 98.98
P:27 [PRO] N:185 [G] 4.0 M:100 [G] 99.0
P:28 [ALA] N:184 [G] 4.17 M:101 [A] 89.77
P:29 [ILE] N:183 [U] 3.59 M:102 [G] 86.51
P:29 [ILE] N:184 [G] 3.53 M:101 [A] 86.51
P:31 [TYR] M:103 [U] 2.81 N:182 [A] sugar:SC 97.71
P:31 [TYR] M:104 [A] 3.28 N:181 [G] 97.71
P:31 [TYR] N:182 [A] 3.43 M:103 [U] 97.71
P:31 [TYR] N:183 [U] 3.49 M:102 [G] 97.71
P:32 [GLY] M:104 [A] 3.58 N:181 [G] 92.43
P:33 [GLY] M:104 [A] 4.96 N:181 [G] 51.48
P:37 [PRO] N:182 [A] 3.89 M:103 [U] 58.59
P:37 [PRO] N:183 [U] 3.27 M:102 [G] 58.59
P:39 [ALA] N:184 [G] 4.75 M:101 [A] 61.39
P:75 [GLN] M:103 [U] 3.11 N:182 [A] sugar:SC 71.11
P:75 [GLN] M:104 [A] 3.72 N:181 [G] 71.11
P:76 [ASP] M:102 [G] 4.87 N:183 [U] 76.93
P:78 [GLN] N:184 [G] 3.8 M:101 [A] 95.02
P:78 [GLN] N:185 [G] 2.65 M:100 [G] base:SC, sugar:SC 95.02
P:78 [GLN] N:186 [U] 4.08 M:99 [A] 95.02
P:87 [GLN] N:185 [G] 3.98 M:100 [G] 46.83
P:87 [GLN] N:186 [U] 3.8 M:99 [A] 46.83
P:88 [HIS] N:184 [G] 2.72 M:101 [A] base:SC 99.0
P:88 [HIS] N:185 [G] 3.22 M:100 [G] 99.0
P:90 [ASP] M:102 [G] 4.29 N:183 [U] 98.98
P:90 [ASP] M:103 [U] 4.51 N:182 [A] 98.98
P:90 [ASP] N:184 [G] 2.87 M:101 [A] base:SC 98.98
P:92 [VAL] M:104 [A] 4.38 N:181 [G] 44.8

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*Conservation was calculated using Rate4Site
NB: conservation is missing (completly white) for a very small minority of cases in which no homologous sequences were found (e.g. synthetic proteins 7D3J_A & 7EU9_A)

Properties of this interface

Interolog group ID Structure ID Structure description
 UniProt ID
 		ECOD label(s)
 		RFAM label(s)
 		Is ribosome? RCSB PDB link
group113 1DFU_P_M,N P: Ribosomal protein l25, Escherichia coli (genetically engineered) M: 5s rRNA N: 5s rRNA P68919 Ribosomal protein L25-like ✔

Interologs

Total number of interologs for this interface: 3

Interface 1 Interface 2 Percentage conservation
 		Interface TM-score
 		Interface RMSD
 		Percentage identity
 		Common ECOD label(s)
 		Common RFAM label(s)
 		Explore both interfaces
1DFU_P_M,N 4YBB_DW_DB 0.97 0.83 0.3 0.53 Ribosomal protein L25-like compare
1DFU_P_M,N 7RYG_U_B 0.80 0.81 0.59 0.47 Ribosomal protein L25-like compare
1DFU_P_M,N 6YSI_R_5 0.80 0.81 0.65 0.47 Ribosomal protein L25-like compare