Interface analysis
Style
Protein
CartoonLicorice
Surface
RNA
CartoonLicorice
Surface
Color
StructureStructure (with hetatm)
Chain
Chainbow
View
Focus on
InterfaceRNA
Protein
All
Show chains
Interface
show interface as licoriceCommon contacts -
1DFU_P
|
1DFU_M,N
|
6YSI_R
|
6YSI_5
|
Conserved?
|
---|---|---|---|---|
P:19 [ARG] | M:94 [A] | R:23 [ARG] | 5:92 [A] | ✔ |
P:19 [ARG] | M:95 [U] | R:23 [ARG] | 5:93 [U] | ✔ |
P:90 [ASP] | M:102 [G] | R:94 [ASP] | 5:100 [G] | ✔ |
P:90 [ASP] | M:103 [U] | R:94 [ASP] | 5:101 [U] | ✔ |
P:31 [TYR] | M:103 [U] | R:35 [TYR] | 5:101 [U] | ✔ |
P:31 [TYR] | M:104 [A] | R:35 [TYR] | 5:102 [A] | ✔ |
P:92 [VAL] | M:104 [A] | R:96 [LYS] | 5:102 [A] | ✔ |
P:75 [GLN] | M:103 [U] | R:79 [GLN] | 5:101 [U] | ✔ |
P:75 [GLN] | M:104 [A] | R:79 [GLN] | 5:102 [A] | ✔ |
P:18 [ARG] | M:92 [C] | R:22 [ARG] | 5:90 [C] | ✔ |
P:18 [ARG] | M:93 [C] | R:22 [ARG] | 5:91 [C] | ✔ |
P:13 [GLY] | M:98 [G] | R:17 [GLY] | 5:96 [G] | ✔ |
P:14 [LYS] | M:97 [C] | R:18 [LYS] | 5:95 [U] | ✔ |
P:14 [LYS] | M:98 [G] | R:18 [LYS] | 5:96 [G] | ✔ |
P:32 [GLY] | M:104 [A] | R:36 [GLY] | 5:102 [A] | ✔ |
P:15 [GLY] | M:94 [A] | R:19 [GLY] | 5:92 [A] | ✔ |
P:19 [ARG] | M:93 [C] | R:23 [ARG] | 5:91 [C] | ❌ 6YSI_R_5 |
P:11 [GLU] | M:95 [U] | R:15 [LYS] | 5:93 [U] | ❌ 6YSI_R_5 |
P:92 [VAL] | M:105 [G] | R:96 [LYS] | 5:103 [A] | ❌ 1DFU_M:105 no longer at interface |
P:76 [ASP] | M:102 [G] | R:80 [ALA] | 5:100 [G] | ❌ 6YSI_R:80 no longer at interface |
P:33 [GLY] | M:104 [A] | R:37 [GLY] | 5:102 [A] | ❌ 6YSI_R:37 no longer at interface |
P:22 [ALA] | M:92 [C] | R:26 [ARG] | 5:90 [C] | ❌ 1DFU_P:22 no longer at interface |
P:22 [ALA] | M:93 [C] | R:26 [ARG] | 5:91 [C] | ❌ 1DFU_P:22 no longer at interface |
Properties of this pair
Common ECOD label(s) |
Common RFAM label(s) |
Interface TM-score |
Interface RMSD |
Percentage identity |
Protein TM-score |
RNA TM-score |
Protein coverage |
RNA coverage |
Percentage conservation |
Apolar conservation |
H-bond conservation |
Percentage switching out |
---|---|---|---|---|---|---|---|---|---|---|---|---|
Ribosomal protein L25-like | 0.81 | 0.65 | 0.47 | 0.96 | 0.36 | 0.96 | 0.53 | 0.80 | 0.86 | 0.75 | 0.71 |
Other pairs involving 1DFU_P_M,N or 6YSI_R_5
Total number of entries: 8
Interface 1 | Interface 2 |
Percentage conservation |
Interface TM-score |
Interface RMSD |
Percentage identity |
Common ECOD label(s) |
Common RFAM label(s) |
Explore both interfaces |
---|---|---|---|---|---|---|---|---|
1DFU_P_M,N | 4YBB_DW_DB | 0.97 | 0.83 | 0.3 | 0.53 | Ribosomal protein L25-like | compare | |
1DFU_P_M,N | 7RYG_U_B | 0.80 | 0.81 | 0.59 | 0.47 | Ribosomal protein L25-like | compare | |
1DFU_P_M,N | 6YSI_R_5 | 0.80 | 0.81 | 0.65 | 0.47 | Ribosomal protein L25-like | compare | |
6S0Z_T_B | 6YSI_R_5 | 0.71 | 0.9 | 1.95 | 0.39 | Ribosomal protein L25-like | 5S ribosomal RNA | compare |
6YSI_R_5 | 7ASM_T_B | 0.65 | 0.9 | 2.0 | 0.39 | Ribosomal protein L25-like | 5S ribosomal RNA | compare |
1FEU_A_B,C | 6YSI_R_5 | 0.67 | 0.55 | 1.0 | 0.3 | Ribosomal protein L25-like | compare | |
4Y4O_1Z_1B | 6YSI_R_5 | 0.60 | 0.87 | 1.36 | 0.3 | Ribosomal protein L25-like | 5S ribosomal RNA | compare |
4YBB_DW_DB | 6YSI_R_5 | 0.92 | 0.97 | 0.56 | 0.83 | Ribosomal protein L25-like | 5S ribosomal RNA | compare |