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All interfaces > All interologs > Interface groups > group113 > 1FEU_A_B,C

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Licorice
Surface

RNA

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Licorice
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Chain
Chain (with hetatm)
Chainbow
Hydrophobicity
Electrostatics (surface only)
Conservation*

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Rim - Core

Contacts -

1FEU_A
1FEU_B,C
Distance
Base Pair
Hbond nuc:res
Base Stacking
Residue conservation
A:10 [ARG] B:75 [G] 2.92 C:188 [A] sugar:SC 99.0
A:10 [ARG] B:76 [G] 3.12 C:187 [G] 99.0
A:14 [LYS] C:180 [C] 4.95 B:83 [G] 37.29
A:14 [LYS] C:181 [A] 2.99 B:82 [U] 37.29
A:14 [LYS] C:182 [U] 2.65 B:81 [G] 37.29
A:15 [PRO] B:76 [G] 3.62 C:187 [G] 60.97
A:15 [PRO] B:77 [U] 3.51 C:186 [A] 60.97
A:16 [SER] B:77 [U] 4.49 C:186 [A] 70.96
A:16 [SER] C:180 [C] 3.25 B:83 [G] 70.96
A:17 [ALA] C:180 [C] 4.75 B:83 [G] 50.78
A:19 [ARG] B:76 [G] 3.04 C:187 [G] sugar:SC 98.75
A:19 [ARG] B:77 [U] 3.3 C:186 [A] 98.75
A:20 [ARG] C:179 [C] 3.48 B:84 [G] 53.79
A:20 [ARG] C:180 [C] 2.78 B:83 [G] 53.79
A:25 [PRO] B:76 [G] 4.9 C:187 [G] 98.97
A:26 [GLY] B:75 [G] 3.76 C:188 [A] 84.29
A:27 [LEU] B:74 [U] 3.1 C:189 [G] 81.76
A:27 [LEU] B:75 [G] 3.29 C:188 [A] 81.76
A:29 [TYR] B:73 [A] 3.59 C:190 [U] 93.14
A:29 [TYR] B:74 [U] 4.18 C:189 [G] 93.14
A:29 [TYR] C:190 [U] 2.66 B:73 [A] sugar:SC 93.14
A:29 [TYR] C:191 [A] 3.15 B:72 [G] 93.14
A:30 [ASN] C:191 [A] 3.45 B:72 [G] 86.14
A:30 [ASN] C:192 [G] 4.96 B:71 [C] 86.14
A:31 [ARG] C:191 [A] 3.65 B:72 [G] 31.03
A:31 [ARG] C:192 [G] 3.16 B:71 [C] 31.03
A:31 [ARG] C:193 [G] 2.65 B:70 [C] 31.03
A:34 [ASN] B:73 [A] 3.24 C:190 [U] base:SC 77.35
A:34 [ASN] B:74 [U] 2.97 C:189 [G] base:SC 77.35
A:34 [ASN] B:75 [G] 4.75 C:188 [A] 77.35
A:36 [LYS] B:75 [G] 3.51 C:188 [A] 52.61
A:36 [LYS] B:76 [G] 4.28 C:187 [G] 52.61
A:72 [ARG] C:190 [U] 2.98 B:73 [A] 73.83
A:72 [ARG] C:191 [A] 2.69 B:72 [G] 73.83
A:73 [GLN] B:75 [G] 3.02 C:188 [A] base:SC 70.02
A:73 [GLN] C:189 [G] 2.88 B:74 [U] base:SC, base:SC, sugar:SC 70.02
A:73 [GLN] C:190 [U] 3.25 B:73 [A] sugar:SC 70.02
A:75 [ASN] B:75 [G] 3.55 C:188 [A] 87.69
A:75 [ASN] B:76 [G] 3.52 C:187 [G] 87.69
A:78 [LYS] C:187 [G] 3.38 B:76 [G] base:SC 65.26
A:84 [GLU] B:76 [G] 3.91 C:187 [G] 54.59
A:84 [GLU] B:77 [U] 3.38 C:186 [A] 54.59
A:85 [HIS] B:75 [G] 2.98 C:188 [A] base:SC, sugar:SC 98.95
A:85 [HIS] B:76 [G] 3.28 C:187 [G] 98.95
A:87 [ASP] B:75 [G] 2.99 C:188 [A] base:SC 98.95
A:87 [ASP] C:189 [G] 3.87 B:74 [U] base:SC 98.95
A:87 [ASP] C:190 [U] 4.43 B:73 [A] 98.95
A:89 [PHE] C:191 [A] 3.06 B:72 [G] 19.34
A:89 [PHE] C:192 [G] 3.56 B:71 [C] 19.34
A:94 [GLU] C:192 [G] 4.46 B:71 [C] 64.03

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*Conservation was calculated using Rate4Site
NB: conservation is missing (completly white) for a very small minority of cases in which no homologous sequences were found (e.g. synthetic proteins 7D3J_A & 7EU9_A)

Properties of this interface

Interolog group ID Structure ID Structure description
 UniProt ID
 		ECOD label(s)
 		RFAM label(s)
 		Is ribosome? RCSB PDB link
group113 1FEU_A_B,C A: 50s ribosomal protein l25, Thermus thermophilus (genetically engineered) B: 19 nt fragment of 5s rRNA C: 21 nt fragment of 5s rRNA P56930 Ribosomal protein L25-like & Ribosomal protein TL5/L25 C-terminal domain-related ✔

Interologs

Total number of interologs for this interface: 6

Interface 1 Interface 2 Percentage conservation
 		Interface TM-score
 		Interface RMSD
 		Percentage identity
 		Common ECOD label(s)
 		Common RFAM label(s)
 		Explore both interfaces
1FEU_A_B,C 6S0Z_T_B 0.64 0.54 0.91 0.3 Ribosomal protein L25-like compare
1FEU_A_B,C 7RYG_U_B 0.65 0.54 0.98 0.32 Ribosomal protein L25-like compare
1FEU_A_B,C 4Y4O_1Z_1B 0.85 0.83 1.11 0.71 Ribosomal protein L25-like compare
1FEU_A_B,C 7ASM_T_B 0.63 0.54 0.97 0.29 Ribosomal protein L25-like compare
1FEU_A_B,C 4YBB_DW_DB 0.68 0.54 1.06 0.25 Ribosomal protein L25-like compare
1FEU_A_B,C 6YSI_R_5 0.67 0.55 1.0 0.3 Ribosomal protein L25-like compare