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All interfaces > All interologs > Interface groups > group113 > 4Y4O_1Z_1B

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Licorice
Surface

RNA

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Licorice
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Chain
Chain (with hetatm)
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Hydrophobicity
Electrostatics (surface only)
Conservation*

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Rim - Core

Contacts -

4Y4O_1Z
4Y4O_1B
Distance
Base Pair
Hbond nuc:res
Base Stacking
Residue conservation
1Z:10 [ARG] 1B:75 [G] 2.86 1B:102 [A] sugar:SC 0.0
1Z:10 [ARG] 1B:76 [G] 3.11 1B:101 [G] 0.0
1Z:14 [LYS] 1B:95 [C] 4.59 1B:82 [G] 0.0
1Z:14 [LYS] 1B:96 [U] 2.74 1B:81 [G] 0.0
1Z:15 [PRO] 1B:76 [G] 3.55 1B:101 [G] 0.0
1Z:15 [PRO] 1B:77 [U] 3.68 1B:100 [A] 0.0
1Z:16 [SER] 1B:77 [U] 4.86 1B:100 [A] 0.0
1Z:19 [ARG] 1B:76 [G] 3.44 1B:101 [G] sugar:SC 0.0
1Z:19 [ARG] 1B:77 [U] 2.4 1B:100 [A] 0.0
1Z:20 [ARG] 1B:95 [C] 4.74 1B:82 [G] 0.0
1Z:25 [PRO] 1B:76 [G] 4.79 1B:101 [G] 0.0
1Z:26 [GLY] 1B:75 [G] 3.56 1B:102 [A] 0.0
1Z:27 [VAL] 1B:74 [U] 3.67 1B:103 [G] 0.0
1Z:27 [VAL] 1B:75 [G] 3.5 1B:102 [A] 0.0
1Z:29 [TYR] 1B:73 [A] 3.5 1B:104 [U] 0.0
1Z:29 [TYR] 1B:74 [U] 4.15 1B:103 [G] 0.0
1Z:29 [TYR] 1B:104 [U] 2.71 1B:73 [A] sugar:SC 0.0
1Z:29 [TYR] 1B:105 [A] 3.27 1B:72 [G] 0.0
1Z:30 [ASN] 1B:105 [A] 3.32 1B:72 [G] 0.0
1Z:31 [ARG] 1B:105 [A] 3.64 1B:72 [G] 0.0
1Z:31 [ARG] 1B:106 [G] 3.55 1B:71 [C] 0.0
1Z:34 [ASN] 1B:73 [A] 3.05 1B:104 [U] base:SC 0.0
1Z:34 [ASN] 1B:74 [U] 2.93 1B:103 [G] base:SC, sugar:SC 0.0
1Z:36 [LYS] 1B:75 [G] 4.31 1B:102 [A] 0.0
1Z:72 [ARG] 1B:104 [U] 3.32 1B:73 [A] 0.0
1Z:72 [ARG] 1B:105 [A] 2.5 1B:72 [G] 0.0
1Z:73 [GLN] 1B:75 [G] 2.82 1B:102 [A] base:SC 0.0
1Z:73 [GLN] 1B:102 [A] 4.98 1B:75 [G] 0.0
1Z:73 [GLN] 1B:103 [G] 2.96 1B:74 [U] base:SC, base:SC, sugar:SC 0.0
1Z:73 [GLN] 1B:104 [U] 3.36 1B:73 [A] 0.0
1Z:75 [ASN] 1B:75 [G] 3.51 1B:102 [A] 0.0
1Z:75 [ASN] 1B:76 [G] 3.46 1B:101 [G] base:SC 0.0
1Z:79 [ARG] 1B:92 [C] 2.67 1B:85 [G] 0.0
1Z:79 [ARG] 1B:93 [G] 3.4 1B:84 [C] 0.0
1Z:80 [ARG] 1B:92 [C] 4.32 1B:85 [G] 0.0
1Z:80 [ARG] 1B:93 [G] 2.47 1B:84 [C] 0.0
1Z:84 [GLU] 1B:76 [G] 4.11 1B:101 [G] 0.0
1Z:84 [GLU] 1B:77 [U] 3.46 1B:100 [A] 0.0
1Z:85 [HIS] 1B:75 [G] 2.71 1B:102 [A] base:SC, sugar:SC 0.0
1Z:85 [HIS] 1B:76 [G] 3.17 1B:101 [G] 0.0
1Z:87 [ASP] 1B:75 [G] 2.91 1B:102 [A] base:SC 0.0
1Z:87 [ASP] 1B:103 [G] 3.66 1B:74 [U] base:SC 0.0
1Z:87 [ASP] 1B:104 [U] 4.18 1B:73 [A] 0.0
1Z:89 [PHE] 1B:105 [A] 3.66 1B:72 [G] 0.0
1Z:89 [PHE] 1B:106 [G] 3.97 1B:71 [C] 0.0

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*Conservation was calculated using Rate4Site
NB: conservation is missing (completly white) for a very small minority of cases in which no homologous sequences were found (e.g. synthetic proteins 7D3J_A & 7EU9_A)

Properties of this interface

Interolog group ID Structure ID Structure description
 UniProt ID
 		ECOD label(s)
 		RFAM label(s)
 		Is ribosome? RCSB PDB link
group113 4Y4O_1Z_1B 1Z: 50s ribosomal protein l25, Thermus thermophilus (strain hb8 / atcc 27634 / dsm 579) (natural) 1B: 5s ribosomal RNA, Thermus thermophilus hb8 (natural) Q5SHZ1 Ribosomal protein L25-like 5S ribosomal RNA ✔

Interologs

Total number of interologs for this interface: 6

Interface 1 Interface 2 Percentage conservation
 		Interface TM-score
 		Interface RMSD
 		Percentage identity
 		Common ECOD label(s)
 		Common RFAM label(s)
 		Explore both interfaces
1FEU_A_B,C 4Y4O_1Z_1B 0.85 0.83 1.11 0.71 Ribosomal protein L25-like compare
4Y4O_1Z_1B 6S0Z_T_B 0.63 0.87 1.54 0.35 Ribosomal protein L25-like 5S ribosomal RNA compare
4Y4O_1Z_1B 7ASM_T_B 0.61 0.88 1.55 0.35 Ribosomal protein L25-like 5S ribosomal RNA compare
4Y4O_1Z_1B 7RYG_U_B 0.59 0.82 1.7 0.32 Ribosomal protein L25-like 5S ribosomal RNA compare
4Y4O_1Z_1B 6YSI_R_5 0.60 0.87 1.36 0.3 Ribosomal protein L25-like 5S ribosomal RNA compare
4Y4O_1Z_1B 4YBB_DW_DB 0.66 0.87 1.58 0.26 Ribosomal protein L25-like 5S ribosomal RNA compare