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All interfaces > All interologs > Interface groups > group113 > 4Y4O_1Z_1B vs 4YBB_DW_DB

Interface analysis


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Common contacts -

4Y4O_1Z
4Y4O_1B
4YBB_DW
4YBB_DB
Conserved?
1Z:29 [TYR] 1B:73 [A] DW:31 [TYR] DB:73 [A] ✔
1Z:29 [TYR] 1B:74 [U] DW:31 [TYR] DB:74 [U] ✔
1Z:29 [TYR] 1B:104 [U] DW:31 [TYR] DB:103 [U] ✔
1Z:29 [TYR] 1B:105 [A] DW:31 [TYR] DB:104 [A] ✔
1Z:19 [ARG] 1B:76 [G] DW:21 [ARG] DB:76 [G] ✔
1Z:19 [ARG] 1B:77 [U] DW:21 [ARG] DB:77 [U] ✔
1Z:89 [PHE] 1B:105 [A] DW:92 [VAL] DB:104 [A] ✔
1Z:84 [GLU] 1B:76 [G] DW:87 [GLN] DB:76 [G] ✔
1Z:84 [GLU] 1B:77 [U] DW:87 [GLN] DB:77 [U] ✔
1Z:36 [LYS] 1B:75 [G] DW:39 [ALA] DB:75 [G] ✔
1Z:10 [ARG] 1B:75 [G] DW:9 [ARG] DB:75 [G] ✔
1Z:10 [ARG] 1B:76 [G] DW:9 [ARG] DB:76 [G] ✔
1Z:75 [ASN] 1B:75 [G] DW:78 [GLN] DB:75 [G] ✔
1Z:75 [ASN] 1B:76 [G] DW:78 [GLN] DB:76 [G] ✔
1Z:25 [PRO] 1B:76 [G] DW:27 [PRO] DB:76 [G] ✔
1Z:15 [PRO] 1B:76 [G] DW:17 [SER] DB:76 [G] ✔
1Z:15 [PRO] 1B:77 [U] DW:17 [SER] DB:77 [U] ✔
1Z:73 [GLN] 1B:103 [G] DW:76 [ASP] DB:102 [G] ✔
1Z:73 [GLN] 1B:104 [U] DW:76 [ASP] DB:103 [U] ✔
1Z:26 [GLY] 1B:75 [G] DW:28 [ALA] DB:75 [G] ✔
1Z:27 [VAL] 1B:74 [U] DW:29 [ILE] DB:74 [U] ✔
1Z:27 [VAL] 1B:75 [G] DW:29 [ILE] DB:75 [G] ✔
1Z:85 [HIS] 1B:75 [G] DW:88 [HIS] DB:75 [G] ✔
1Z:85 [HIS] 1B:76 [G] DW:88 [HIS] DB:76 [G] ✔
1Z:34 [ASN] 1B:73 [A] DW:37 [PRO] DB:73 [A] ✔
1Z:34 [ASN] 1B:74 [U] DW:37 [PRO] DB:74 [U] ✔
1Z:16 [SER] 1B:77 [U] DW:18 [ARG] DB:77 [U] ✔
1Z:30 [ASN] 1B:105 [A] DW:32 [GLY] DB:104 [A] ✔
1Z:87 [ASP] 1B:75 [G] DW:90 [ASP] DB:75 [G] ✔
1Z:87 [ASP] 1B:103 [G] DW:90 [ASP] DB:102 [G] ✔
1Z:87 [ASP] 1B:104 [U] DW:90 [ASP] DB:103 [U] ✔
1Z:31 [ARG] 1B:105 [A] DW:33 [GLY] DB:104 [A] ✔
1Z:72 [ARG] 1B:104 [U] DW:75 [GLN] DB:103 [U] ✔
1Z:72 [ARG] 1B:105 [A] DW:75 [GLN] DB:104 [A] ✔
1Z:73 [GLN] 1B:75 [G] DW:76 [ASP] DB:75 [G] ❌ 4YBB_DW_DB
1Z:16 [SER] 1B:93 [G] DW:18 [ARG] DB:92 [C] ❌ 4Y4O_1Z_1B
1Z:75 [ASN] 1B:77 [U] DW:78 [GLN] DB:77 [U] ❌ 4Y4O_1Z_1B
1Z:89 [PHE] 1B:106 [G] DW:92 [VAL] DB:105 [G] ❌ 4YBB_DB:105 no longer at interface
1Z:79 [ARG] 1B:92 [C] DW:82 [TYR] DB:91 [C] ❌ 4YBB_DW:82, 4YBB_DB:91 no longer at interface
1Z:73 [GLN] 1B:102 [A] DW:76 [ASP] DB:101 [A] ❌ 4YBB_DB:101 no longer at interface
1Z:80 [ARG] 1B:92 [C] DW:83 [LYS] DB:91 [C] ❌ 4YBB_DW:83, 4YBB_DB:91 no longer at interface
1Z:31 [ARG] 1B:106 [G] DW:33 [GLY] DB:105 [G] ❌ 4YBB_DB:105 no longer at interface
1Z:16 [SER] 1B:79 [C] DW:18 [ARG] DB:79 [G] ❌ 4Y4O_1B:79 no longer at interface
1Z:16 [SER] 1B:94 [C] DW:18 [ARG] DB:93 [C] ❌ 4Y4O_1B:94 no longer at interface
1Z:16 [SER] 1B:78 [A] DW:18 [ARG] DB:78 [A] ❌ 4Y4O_1B:78 no longer at interface
1Z:17 [ALA] 1B:94 [C] DW:19 [ARG] DB:93 [C] ❌ 4Y4O_1Z:17, 4Y4O_1B:94 no longer at interface
1Z:79 [ARG] 1B:93 [G] DW:82 [TYR] DB:92 [C] ❌ 4YBB_DW:82 no longer at interface
1Z:80 [ARG] 1B:93 [G] DW:83 [LYS] DB:92 [C] ❌ 4YBB_DW:83 no longer at interface
1Z:14 [LYS] 1B:95 [C] DW:16 [ALA] DB:94 [A] ❌ 4YBB_DW:16 no longer at interface
1Z:14 [LYS] 1B:96 [U] DW:16 [ALA] DB:95 [U] ❌ 4YBB_DW:16 no longer at interface
1Z:20 [ARG] 1B:95 [C] DW:22 [ALA] DB:94 [A] ❌ 4YBB_DW:22 no longer at interface
1Z:13 [GLU] 1B:75 [G] DW:12 [GLN] DB:75 [G] ❌ 4Y4O_1Z:13 no longer at interface
1Z:13 [GLU] 1B:76 [G] DW:12 [GLN] DB:76 [G] ❌ 4Y4O_1Z:13 no longer at interface
1Z:17 [ALA] 1B:96 [U] DW:19 [ARG] DB:95 [U] ❌ 4Y4O_1Z:17 no longer at interface
1Z:17 [ALA] 1B:95 [C] DW:19 [ARG] DB:94 [A] ❌ 4Y4O_1Z:17 no longer at interface

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Properties of this pair

Common ECOD label(s)
 Common RFAM label(s)
 Interface TM-score
 Interface RMSD
 Percentage identity
 Protein TM-score
 RNA TM-score
 Protein coverage
 RNA coverage
 Percentage conservation
 Apolar conservation
 H-bond conservation
 Percentage switching out
Ribosomal protein L25-like 5S ribosomal RNA 0.87 1.58 0.26 0.84 0.88 0.83 0.79 0.66 0.81 0.28 0.86


Other pairs involving 4Y4O_1Z_1B or 4YBB_DW_DB

Total number of entries: 12

Interface 1 Interface 2 Percentage conservation
 		Interface TM-score
 		Interface RMSD
 		Percentage identity
 		Common ECOD label(s)
 		Common RFAM label(s)
 		Explore both interfaces
1DFU_P_M,N 4YBB_DW_DB 0.97 0.83 0.3 0.53 Ribosomal protein L25-like compare
1FEU_A_B,C 4Y4O_1Z_1B 0.85 0.83 1.11 0.71 Ribosomal protein L25-like compare
1FEU_A_B,C 4YBB_DW_DB 0.68 0.54 1.06 0.25 Ribosomal protein L25-like compare
4Y4O_1Z_1B 6S0Z_T_B 0.63 0.87 1.54 0.35 Ribosomal protein L25-like 5S ribosomal RNA compare
4Y4O_1Z_1B 7ASM_T_B 0.61 0.88 1.55 0.35 Ribosomal protein L25-like 5S ribosomal RNA compare
4Y4O_1Z_1B 7RYG_U_B 0.59 0.82 1.7 0.32 Ribosomal protein L25-like 5S ribosomal RNA compare
4Y4O_1Z_1B 6YSI_R_5 0.60 0.87 1.36 0.3 Ribosomal protein L25-like 5S ribosomal RNA compare
4Y4O_1Z_1B 4YBB_DW_DB 0.66 0.87 1.58 0.26 Ribosomal protein L25-like 5S ribosomal RNA compare
4YBB_DW_DB 7RYG_U_B 0.91 0.93 1.12 0.86 Ribosomal protein L25-like 5S ribosomal RNA compare
4YBB_DW_DB 6S0Z_T_B 0.64 0.91 2.15 0.39 Ribosomal protein L25-like 5S ribosomal RNA compare
4YBB_DW_DB 7ASM_T_B 0.61 0.9 2.27 0.38 Ribosomal protein L25-like 5S ribosomal RNA compare
4YBB_DW_DB 6YSI_R_5 0.92 0.97 0.56 0.83 Ribosomal protein L25-like 5S ribosomal RNA compare