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All interfaces > All interologs > Interface groups > group113 > 4Y4O_1Z_1B vs 6S0Z_T_B

Interface analysis


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Common contacts -

4Y4O_1Z
4Y4O_1B
6S0Z_T
6S0Z_B
Conserved?
1Z:29 [TYR] 1B:73 [A] T:32 [TYR] B:71 [A] ✔
1Z:29 [TYR] 1B:74 [U] T:32 [TYR] B:72 [U] ✔
1Z:29 [TYR] 1B:104 [U] T:32 [TYR] B:100 [U] ✔
1Z:29 [TYR] 1B:105 [A] T:32 [TYR] B:101 [A] ✔
1Z:19 [ARG] 1B:76 [G] T:22 [ARG] B:74 [G] ✔
1Z:19 [ARG] 1B:77 [U] T:22 [ARG] B:75 [U] ✔
1Z:89 [PHE] 1B:105 [A] T:92 [LEU] B:101 [A] ✔
1Z:84 [GLU] 1B:76 [G] T:87 [THR] B:74 [G] ✔
1Z:84 [GLU] 1B:77 [U] T:87 [THR] B:75 [U] ✔
1Z:36 [LYS] 1B:75 [G] T:40 [SER] B:73 [G] ✔
1Z:10 [ARG] 1B:75 [G] T:9 [ARG] B:73 [G] ✔
1Z:10 [ARG] 1B:76 [G] T:9 [ARG] B:74 [G] ✔
1Z:75 [ASN] 1B:75 [G] T:78 [GLN] B:73 [G] ✔
1Z:75 [ASN] 1B:76 [G] T:78 [GLN] B:74 [G] ✔
1Z:25 [PRO] 1B:76 [G] T:28 [PRO] B:74 [G] ✔
1Z:15 [PRO] 1B:76 [G] T:18 [LEU] B:74 [G] ✔
1Z:15 [PRO] 1B:77 [U] T:18 [LEU] B:75 [U] ✔
1Z:14 [LYS] 1B:96 [U] T:14 [THR] B:92 [C] ✔
1Z:26 [GLY] 1B:75 [G] T:29 [ALA] B:73 [G] ✔
1Z:27 [VAL] 1B:74 [U] T:30 [VAL] B:72 [U] ✔
1Z:27 [VAL] 1B:75 [G] T:30 [VAL] B:73 [G] ✔
1Z:85 [HIS] 1B:75 [G] T:88 [HIS] B:73 [G] ✔
1Z:85 [HIS] 1B:76 [G] T:88 [HIS] B:74 [G] ✔
1Z:34 [ASN] 1B:73 [A] T:38 [ASN] B:71 [A] ✔
1Z:34 [ASN] 1B:74 [U] T:38 [ASN] B:72 [U] ✔
1Z:30 [ASN] 1B:105 [A] T:33 [GLY] B:101 [A] ✔
1Z:87 [ASP] 1B:75 [G] T:90 [ASP] B:73 [G] ✔
1Z:87 [ASP] 1B:103 [G] T:90 [ASP] B:99 [G] ✔
1Z:72 [ARG] 1B:104 [U] T:75 [ALA] B:100 [U] ✔
1Z:14 [LYS] 1B:95 [C] T:14 [THR] B:91 [C] ❌ 6S0Z_T_B
1Z:16 [SER] 1B:77 [U] T:19 [LYS] B:75 [U] ❌ 6S0Z_T_B
1Z:87 [ASP] 1B:104 [U] T:90 [ASP] B:100 [U] ❌ 6S0Z_T_B
1Z:72 [ARG] 1B:105 [A] T:75 [ALA] B:101 [A] ❌ 6S0Z_T_B
1Z:16 [SER] 1B:95 [C] T:19 [LYS] B:91 [C] ❌ 4Y4O_1Z_1B
1Z:16 [SER] 1B:93 [G] T:19 [LYS] B:89 [U] ❌ 4Y4O_1Z_1B
1Z:75 [ASN] 1B:77 [U] T:78 [GLN] B:75 [U] ❌ 4Y4O_1Z_1B
1Z:89 [PHE] 1B:106 [G] T:92 [LEU] B:102 [G] ❌ 6S0Z_B:102 no longer at interface
1Z:79 [ARG] 1B:92 [C] T:82 [LEU] B:88 [G] ❌ 6S0Z_T:82, 6S0Z_B:88 no longer at interface
1Z:73 [GLN] 1B:102 [A] T:76 [ASP] B:98 [A] ❌ 6S0Z_T:76, 6S0Z_B:98 no longer at interface
1Z:80 [ARG] 1B:92 [C] T:83 [LYS] B:88 [G] ❌ 6S0Z_T:83, 6S0Z_B:88 no longer at interface
1Z:31 [ARG] 1B:106 [G] T:34 [TYR] B:102 [G] ❌ 6S0Z_T:34, 6S0Z_B:102 no longer at interface
1Z:14 [LYS] 1B:97 [G] T:14 [THR] B:93 [G] ❌ 4Y4O_1B:97 no longer at interface
1Z:16 [SER] 1B:94 [C] T:19 [LYS] B:90 [U] ❌ 4Y4O_1B:94 no longer at interface
1Z:79 [ARG] 1B:93 [G] T:82 [LEU] B:89 [U] ❌ 6S0Z_T:82 no longer at interface
1Z:73 [GLN] 1B:75 [G] T:76 [ASP] B:73 [G] ❌ 6S0Z_T:76 no longer at interface
1Z:73 [GLN] 1B:103 [G] T:76 [ASP] B:99 [G] ❌ 6S0Z_T:76 no longer at interface
1Z:73 [GLN] 1B:104 [U] T:76 [ASP] B:100 [U] ❌ 6S0Z_T:76 no longer at interface
1Z:80 [ARG] 1B:93 [G] T:83 [LYS] B:89 [U] ❌ 6S0Z_T:83 no longer at interface
1Z:20 [ARG] 1B:95 [C] T:23 [LYS] B:91 [C] ❌ 6S0Z_T:23 no longer at interface
1Z:31 [ARG] 1B:105 [A] T:34 [TYR] B:101 [A] ❌ 6S0Z_T:34 no longer at interface
1Z:13 [GLU] 1B:76 [G] T:13 [GLN] B:74 [G] ❌ 4Y4O_1Z:13 no longer at interface
1Z:17 [ALA] 1B:95 [C] T:20 [GLN] B:91 [C] ❌ 4Y4O_1Z:17 no longer at interface

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Properties of this pair

Common ECOD label(s)
 Common RFAM label(s)
 Interface TM-score
 Interface RMSD
 Percentage identity
 Protein TM-score
 RNA TM-score
 Protein coverage
 RNA coverage
 Percentage conservation
 Apolar conservation
 H-bond conservation
 Percentage switching out
Ribosomal protein L25-like 5S ribosomal RNA 0.87 1.54 0.35 0.83 0.83 0.78 0.79 0.63 0.63 0.42 0.70


Other pairs involving 4Y4O_1Z_1B or 6S0Z_T_B

Total number of entries: 10

Interface 1 Interface 2 Percentage conservation
 		Interface TM-score
 		Interface RMSD
 		Percentage identity
 		Common ECOD label(s)
 		Common RFAM label(s)
 		Explore both interfaces
6S0Z_T_B 7ASM_T_B 0.96 0.99 0.47 1.0 Ribosomal protein L25-like 5S ribosomal RNA compare
6S0Z_T_B 6YSI_R_5 0.71 0.9 1.95 0.39 Ribosomal protein L25-like 5S ribosomal RNA compare
1FEU_A_B,C 6S0Z_T_B 0.64 0.54 0.91 0.3 Ribosomal protein L25-like compare
1FEU_A_B,C 4Y4O_1Z_1B 0.85 0.83 1.11 0.71 Ribosomal protein L25-like compare
4Y4O_1Z_1B 6S0Z_T_B 0.63 0.87 1.54 0.35 Ribosomal protein L25-like 5S ribosomal RNA compare
4Y4O_1Z_1B 7ASM_T_B 0.61 0.88 1.55 0.35 Ribosomal protein L25-like 5S ribosomal RNA compare
4Y4O_1Z_1B 7RYG_U_B 0.59 0.82 1.7 0.32 Ribosomal protein L25-like 5S ribosomal RNA compare
4Y4O_1Z_1B 6YSI_R_5 0.60 0.87 1.36 0.3 Ribosomal protein L25-like 5S ribosomal RNA compare
4Y4O_1Z_1B 4YBB_DW_DB 0.66 0.87 1.58 0.26 Ribosomal protein L25-like 5S ribosomal RNA compare
4YBB_DW_DB 6S0Z_T_B 0.64 0.91 2.15 0.39 Ribosomal protein L25-like 5S ribosomal RNA compare